Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01052 ATGGGGTGTTTGGTTAGCCGACAGGCGTCTTCTAGAAGTGTAGAACCCCCTGTAGATAACGGGAAGAGGAATCAAATTACTGAGCCTGGTGTCCAAGTCGAGCATGTACAGGAAAAAGAACTAGAGCATGTTAATGCTAATGTAGAGGAGCATGCAAATGTGAGCAAGGAGGAGGAGCAGAAGGCTGATGGTGGTCAGGATCGGCCACGAGCAGAGCGGCGGAGGTCGAGGAAGGTTCCAAGGCCTGTTAACCTGCCAAACCATTCCCAGGGAGAGCAAGTTGCTGCTGGATGGCCATCTTGGCTCACAGCAGTTTGTGGGGAGGCTCTCAATGGTTGGATTCCAAGGAAGGCTGATACGTTTGAAAAGATTGATAAGATTGGACAAGGAACGTATAGCAATGTGTATAAGGCTAAAGATATACTTACAGGTAAAATTGTTGCACTGAAGAAGGTTCGATTTGACAATCTGGAACCGGAAAGTGTGAAATTTATGGCTAGAGAGATTCTAATCCTTCGGAGATTAAATCATAATAACGTTGTGAAATTGGAGGGGTTGGTCACATCGCGGATGTCTTGTAGTTTATACTTGGTGTTTGAGTACATGGAACATGATTTAGCTGGTCTTGCTGCAAATCCATCAATCAAGTTTACGGAATCTCAGGTTAAATGTTTCATGCAACAACTGCTATCTGGACTGGAACACTGTCACAATCGTCATGTGCTTCACCGTGATATTAAAGGATCTAATCTTCTCATTGATAGTGGGGGAGTGCTTAAGATTGCTGATTTTGGATTGGCTTCTTTCTTTGATCCTAATCACAAGCACCCAATGACTAGTCGAGTTGTTACCTTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCAACTGATTATGGAGTAGGTGTAGACCTCTGGAGTGCTGGGTGTATACTGGCTGAGTTATTAGCTGGGAGGCCTATTATGCCTGGCCGTACAGAGGTGGAGCAACTACACAAGATATACAAGCTTTGTGGCTCCCCTTCAGATGAATATTGGAAAAGAGCAAAGCTTCCAAATGCAACATTATTTAAGCCCAGAGAACCTTATAAAAGATGTATAAAGGAGACATTTACAGATTTCCCGCTATCTTCCCTGCCCCTTATAGAAACGCTTCTTGCAATTGATCCAGTTGAACGAAAGACAGCAACAGATGCATTAAATAGCGAGTTCTTCATGACAGAGCCTTTAGCTTGCAAACCCTCCAGCCTCCCGAAATATCCTCCCAGTAAGGAGATGGATGCTAGAAGACGGGATGATGAAGCCCGGAGACTAAGAGCAGCTAACAAAGCCCAGGGAGATGGAGTGAAGAAAACACGCACACGTGTTAGGGCGATTCCAGCTCCTGAAGCCAATGCAGAAATACAAACAAATATCGATAGAAGGCGCTTAATTACACATGCAAATGCAAAGAGCAAAAGCGAAAAGTTCCCCCCACCGCACCAAGACGGAGCGCTTGGCTTTACGCTAGGATATTCACGGCATATGGATCCATCCGGTGTTCCTCCCGACATACCATTCAGCTCGACGCTGTTCACTTACTCTAAGGAGCCAGTCCAAGTCTGGTCTGGTCCACTGGTCCCTGGTGCTGGCACTGATGCTCCACCTAGGCAGAAGAAGCATGTGGGAGGTAAAGGCAAGAAAATCATGGTCTAA 1695 45.78 MGCLVSRQASSRSVEPPVDNGKRNQITEPGVQVEHVQEKELEHVNANVEEHANVSKEEEQKADGGQDRPRAERRRSRKVPRPVNLPNHSQGEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDILTGKIVALKKVRFDNLEPESVKFMAREILILRRLNHNNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTESQVKCFMQQLLSGLEHCHNRHVLHRDIKGSNLLIDSGGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIYKLCGSPSDEYWKRAKLPNATLFKPREPYKRCIKETFTDFPLSSLPLIETLLAIDPVERKTATDALNSEFFMTEPLACKPSSLPKYPPSKEMDARRRDDEARRLRAANKAQGDGVKKTRTRVRAIPAPEANAEIQTNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHMDPSGVPPDIPFSSTLFTYSKEPVQVWSGPLVPGAGTDAPPRQKKHVGGKGKKIMV 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8060519 8073522 - Carg26500-RA Car11g01052 157005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01052 564 MobiDBLite consensus disorder prediction 1 92 - -
Car11g01052 564 MobiDBLite consensus disorder prediction 415 435 - -
Car11g01052 564 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Car11g01052 564 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Car11g01052 564 Pfam Protein kinase domain 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car11g01052 564 MobiDBLite consensus disorder prediction 33 73 - -
Car11g01052 564 MobiDBLite consensus disorder prediction 1 31 - -
Car11g01052 564 Coils Coil 41 61 - -
Car11g01052 564 MobiDBLite consensus disorder prediction 539 564 - -
Car11g01052 564 ProSiteProfiles Protein kinase domain profile. 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00947 Car-Chr10:8002534 Car11g01052 Car-Chr11:8060519 0 dispersed
Car11g01052 Car-Chr11:8060519 Car12g01072 Car-Chr12:10502659 0 dispersed
Car11g01052 Car-Chr11:8060519 Car14g01474 Car-Chr14:12256152 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89188 PF00069 Pkinase 4.60E-67 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01052 K08819 - csv:101215893 1069.68