Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01076 ATGGGAGAGGCCTTGGCCTTTGATGCTTCCTTTATCCAACCCATTCAGCACCGCCCGAAGCTCGAACCCGTCGACCCCATCGACGAAGTTCCCACTATTGATCTCTCCATCTCCGACTCTCGTAGCGTAGAACAACTTGTTTCTGACATAGCCTCGGCTTGCGAGAACTGGGGTTTCTTCCAGGTCATCAACCATGGAGTTCCCATGGAGTTGGTTGCGAGAATGGAGGAAGTAACGAAGTTGTTTTTTGACCAGGGAGTAGACGAAAAGAGGAAGGTGAAGAGAGATGCCGCCAACGCTATGGGGTACCATGACGGCGAGAATACGAAAAACGTTAGGGATTGGAAGGAGGTGTTTGATTTCTTGGTTAAGGATCGGACGTTGGTTCCGGCTTCGCACGAGCCAGATGACACGAATTTGAGGGTTTTGACTAATCAGTGGCCACAATATCCCCCTGGATTTAGGGAAACATGTGAGGAGTATGCAAAGGAGTTGGAATTGTTAGCTTATAAGCTACTGGGGCTGATTTGTTTGAGTCTTGGATTGTCTGTTGCGGATAGATTGAAGGGTTATTTCCAAGATGAGCAAATGAGCATGGTGAGATTGAATCGGTATCCTCCATGCTCATCTCCAGATCTTGTGCTTGGCGTTGGGCGTCACAAGGATGCTGGTGCCTTGACTATCCTTGCCCAAGATGGTGTTGGAGGGCTGCAAGTGAGGAGAAAATCAGATGGAGAATGGATTCCTGTCAAACCAATCTCAAATGCATATATTGTTAACATTGGTGACATTGTTCAAGTTTGGAGCAATGACAAATACGAAAGTGTGGAGCACAGGGTGGTGGTGAATACAGAGAAGGAAAGGTTTTCCATTCCATTCTTCTTCTTTCCAGCGCACCATACAATGGTGAAGCCATTGGAGGAGGTTGTGAATGAACAAAATCCCCCAAAATACAGAGAATACAACTTTGGAAAGTTCTTTGCGTCCAGAAACCGCAGTGATTTCCAGAAGCAAAAAGTGGAAAACGTCCAAATTGATCATTTTAGGCTGCCTGTGTGA 1059 46.55 MGEALAFDASFIQPIQHRPKLEPVDPIDEVPTIDLSISDSRSVEQLVSDIASACENWGFFQVINHGVPMELVARMEEVTKLFFDQGVDEKRKVKRDAANAMGYHDGENTKNVRDWKEVFDFLVKDRTLVPASHEPDDTNLRVLTNQWPQYPPGFRETCEEYAKELELLAYKLLGLICLSLGLSVADRLKGYFQDEQMSMVRLNRYPPCSSPDLVLGVGRHKDAGALTILAQDGVGGLQVRRKSDGEWIPVKPISNAYIVNIGDIVQVWSNDKYESVEHRVVVNTEKERFSIPFFFFPAHHTMVKPLEEVVNEQNPPKYREYNFGKFFASRNRSDFQKQKVENVQIDHFRLPV 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8361026 8362997 + Carg26378-RA Car11g01076 157029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01076 352 Pfam non-haem dioxygenase in morphine synthesis N-terminal 30 149 IPR026992 -
Car11g01076 352 Pfam 2OG-Fe(II) oxygenase superfamily 198 297 IPR044861 -
Car11g01076 352 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 196 297 IPR005123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01076 - - - csv:101209915 551.592
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01076 Car-Chr11:8361026 Car06g01279 Car-Chr6:9189324 4.44E-63 dispersed
Car13g00579 Car-Chr13:7640128 Car11g01076 Car-Chr11:8361026 1.14E-50 dispersed
Car13g00958 Car-Chr13:9661988 Car11g01076 Car-Chr11:8361026 7.03E-41 dispersed
Car02g00336 Car-Chr2:2385546 Car11g01076 Car-Chr11:8361026 3.56E-39 transposed
Car05g01277 Car-Chr5:11847030 Car11g01076 Car-Chr11:8361026 4.83E-32 transposed
Car11g01076 Car-Chr11:8361026 Car19g00478 Car-Chr19:6421691 1.35E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g494 . . . . . . . . . Cmo11g01335 . . . . . Cpe04g00259 . . . . . . . . Cla02g00570 Cam02g0600 Cec02g0600 Cco02g0611 Clacu02g0596 Cmu02g0594 . . . . . . . . Cme01g00017 . . . . Bpe15g00885 . . . . . . . . Car11g01076 . . . . . . . . . . . . . . . . . Lsi11g01040 . Chy01g00022 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000982 2 2 0 0 1 2 2 2 3 3 2 2 3 2 3 3 2 4 3 3 4 2 3 1 3 4 5 3 3 12 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g01076 Car_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0