Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01085 ATGAAATTCGATGACGAGAATTTCGAGGTGAAACATGAAAGGAAAGGAATGTTATCTATGGCTAATTCTGGTCCCAACACAAATGGATCCCAATTTTTTATAAGTACTACTCGCACTTCTCATTTAGACGGGAAACATGTAGTGTTTGGGAAGGTTGTGAAAGGAATGGGCGTTGTTCGTTCAATTGAACATGTTACTACTGGTGAAAATGATCGCCCTACGGCGGACGTCGTTATTGTGGATTGTGGAGAAATTCCTGAGGGAGCGGATGACGGGATTTCGAACTTTTTTAATGATGGGGATACGTTTCCTGATTGGCCAGCTGATCTAGAACAGACACCTAGTGAACTCGAATGGTGGGTGAATGCTGTAGATTCTGTGAAGGTTTTTGGTAATGAGCATTACAAGAAGCAAGACTACAAGATGGCTCTTAGAAAGTATCGGAAGGCTTTACGCTACCTCGATATCTGCTGGGAAAAAGAAGGAATTGACGAAGAGAAGAGTTCATATCTTAGAAAGACAAAATCACAGATCTTCACAAACAGTTCGGCTTGTAAGTTGAAATTAGGGGATCTAAAAGGAGCGTTGTTGGACACCGATTTTGCAATGCGTGACGGAGACAATAATGTCAAAGCTTTGTTTCGCCAAGGTCAGGCATACATGGCTCTTAATGACATCGATTCCGCTGTCGAAAGTTTCAAAAAGGCATTGGATTTGGAGCCAAATGACGCTGCAATAAAGAAAGAGCTCGCTGCTGCAAGGAAAAAGATTGTCGACAGACGTAATCAAGAAAGAAAAGCATATAGCAAGATGTTCCAGTAG 822 41.85 MKFDDENFEVKHERKGMLSMANSGPNTNGSQFFISTTRTSHLDGKHVVFGKVVKGMGVVRSIEHVTTGENDRPTADVVIVDCGEIPEGADDGISNFFNDGDTFPDWPADLEQTPSELEWWVNAVDSVKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEEKSSYLRKTKSQIFTNSSACKLKLGDLKGALLDTDFAMRDGDNNVKALFRQGQAYMALNDIDSAVESFKKALDLEPNDAAIKKELAAARKKIVDRRNQERKAYSKMFQ 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8480080 8483742 + Carg27593-RA Car11g01085 157038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01085 273 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 84 IPR002130 GO:0000413|GO:0003755
Car11g01085 273 Pfam Tetratricopeptide repeat 210 243 IPR001440 GO:0005515
Car11g01085 273 ProSiteProfiles TPR repeat region circular profile. 210 243 - -
Car11g01085 273 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 2 83 IPR002130 GO:0000413|GO:0003755
Car11g01085 273 ProSiteProfiles TPR repeat profile. 210 243 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01085 K05864 PPID, CYPD; peptidyl-prolyl isomerase D [EC:5.2.1.8] - csv:101208688 504.597
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g01085 Car20g00765 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01085 Car-Chr11:8480080 Car20g00765 Car-Chr20:4507994 3.30E-172 dispersed
Car11g01085 Car-Chr11:8480080 Car08g00286 Car-Chr8:1802127 4.78E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g464 . . . . . Bpe12g00062 . . . Cmo11g01347 . Cma20g00888 . Car20g00765 . Cpe04g00267 . Bhi05g01141 . . . Hepe02g0569 . . Cla02g00581 Cam02g0614 Cec02g0613 Cco02g0629 Clacu02g0610 Cmu02g0607 Cre02g0938 . Cone8ag1151 Cone3ag1116 Cone10ag1127 Lsi10g00310 Csa07g00780 Chy11g00439 Cme01g00031 . Blo13g00569 Bda15g00028 . . . . . Sed05g3656 . Cmo20g00895 Cma11g01765 . Car11g01085 . . . Bhi10g02077 Tan05g1396 Cmetu11g0215 . Hepe08g1064 . . Cla09g01711 Cam09g1807 Cec09g1868 Cco09g1961 . . Cre01g0699 Lsi11g01025 Csa02g01199 Chy01g00036 Cme11g00511
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002414 1 5 1 0 1 2 2 2 2 2 2 2 2 2 2 1 2 3 2 2 2 2 2 2 2 2 2 2 6 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g01085 Car_Chr11 FPKM 26.516161 30.149862 15.041325 15.738118 22.505554 21.056231 23.555635 10.820682 10.187867 11.143297