Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01090 ATGGCTTCCACTACCGTCGCACAAGAAGATCAGAACCAAGCCGGAAGGCACCAGGAAGTCGGTCACAAGAGCCTCTTACAGAGCGATGCTCTGTATCAGTACATTCTCGAGACGAGCGTTTATCCGAGAGAGCCAGAACCGATGAAGGAATTAAGAGAATTGACTGCCAAACATCCATGGAACATCATGACGACATCGGCCGACGAAGGACAGTTCTTAAACATGCTTTTGAAGCTAATTAATGCGAAGAAGACAATGGAGATTGGA 267 47.19 MASTTVAQEDQNQAGRHQEVGHKSLLQSDALYQYILETSVYPREPEPMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKKTMEIG 89
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8560992 8561443 - Carg26412-RA Car11g01090 157043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01090 89 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 24 89 IPR002935 GO:0008171
Car11g01090 89 MobiDBLite consensus disorder prediction 1 22 - -
Car11g01090 89 Pfam O-methyltransferase 37 89 IPR002935 GO:0008171
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01090 K00588 E2.1.1.104; caffeoyl-CoA O-methyltransferase [EC:2.1.1.104] - csv:101205648 172.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00598 Car-Chr4:3420061 Car11g01090 Car-Chr11:8560992 7.25E-08 dispersed
Car11g01090 Car-Chr11:8560992 Car19g00457 Car-Chr19:6278605 2.98E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g390 Blo02g00828 Blo15g00753 . . Bpe07g00372 Bpe12g00054 . Bma12g00435 . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1124 Cone3ag1185 . . . . . Blo04g00485 Blo13g00578 . Bda14g00513 Bpe15g00900 . Bma03g00515 Bma08g00803 . . . . . Car11g01090 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002253 3 1 5 3 3 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 2 3 3 2 3 2 3 4 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g01090 Car_Chr11 FPKM 9.225393 9.025921 0.23227 0.0 4.081551 4.573739 3.737628 1.918411 2.06145 2.274237