Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01091 ATGGCTGCCCCTCACAATATTTGGGCCTTCCTCAACTCCGGCAGTGATGTCGATATCGACATCGATCTTGACGATGATAATGACAACGACAATAGCAACGACAAATCCCCTGCCAACACCGACCTCTTACCTCCCCTGCCTTTGTCGGGAAGGAAGAGGGAGGCAGCGGAGGGGAGACCGGGTGGAGGTGGAGAGTCGACCGAACATGAAATTCATATTTGGACGGAGAGGGAGAGGAGGAAGAGGATGAGGAATATGTTCTCTAATCTTCATGCTTTGATTCCTCACCTTCCTCCTAAGGCAGACAAATCAACTATAGTGGACGAAGCAGTAAACTACATAAAAACTGTACAACAAACTCTTCAAACACTCTACAACCAAAAGCTCGAAAAGCTCCAAAACAACAATCCAGCTGTGAGCTATAAGGCTGCTCATTATCATCCTCAACAACAACAGCAACAACAACAATTCAGCTCAACCACCACAACCCACCAAGCTTTCTTGGCCGATCAAGCTTCTTCCTCCAACGGCATGTCCTCCACTCTTCTTCCACCACCACTGCCACCACTGCCGCCGCTGCCGCCTCCCTTTTCTGATACTACTACGACGTTTCAGACTTGGACTTCCTCCCACCTCGTATTATGTATTTGTGGCGGTGAAGCCCATTTCTGCATCTGCTCCGTCAAGAAGTCTGGCTTGTTCGCCGCCGTTTGTTATATTCTTGATAAGCATCAGATCGAGGTTGTTTCGGCTCATGTCTCCTCGGATTTCCATCGCACGTTCTTTATGATTCAAGGCCATGTGAATGGAAGTTGGGACGAATTCGGGGCAGCGATGGTGGCAGAAGAAATGTTCAAGCAAGCTGCGGGGGAGATCAACTTCTGGTTGTCTTCTTGA 897 48.83 MAAPHNIWAFLNSGSDVDIDIDLDDDNDNDNSNDKSPANTDLLPPLPLSGRKREAAEGRPGGGGESTEHEIHIWTERERRKRMRNMFSNLHALIPHLPPKADKSTIVDEAVNYIKTVQQTLQTLYNQKLEKLQNNNPAVSYKAAHYHPQQQQQQQQFSSTTTTHQAFLADQASSSNGMSSTLLPPPLPPLPPLPPPFSDTTTTFQTWTSSHLVLCICGGEAHFCICSVKKSGLFAAVCYILDKHQIEVVSAHVSSDFHRTFFMIQGHVNGSWDEFGAAMVAEEMFKQAAGEINFWLSS 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8599152 8601218 + Carg26411-RA Car11g01091 157044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01091 298 MobiDBLite consensus disorder prediction 52 68 - -
Car11g01091 298 MobiDBLite consensus disorder prediction 142 194 - -
Car11g01091 298 Pfam Helix-loop-helix DNA-binding domain 75 118 IPR011598 GO:0046983
Car11g01091 298 MobiDBLite consensus disorder prediction 20 68 - -
Car11g01091 298 MobiDBLite consensus disorder prediction 142 181 - -
Car11g01091 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 117 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01091 - - - csv:101219151 292.352
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01260 Car-Chr2:8476105 Car11g01091 Car-Chr11:8599152 2.36E-06 dispersed
Car11g01091 Car-Chr11:8599152 Car05g00924 Car-Chr5:8980572 4.59E-07 dispersed
Car14g01469 Car-Chr14:12240254 Car11g01091 Car-Chr11:8599152 1.75E-07 transposed
Car11g01091 Car-Chr11:8599152 Car19g00456 Car-Chr19:6270683 8.33E-105 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g392 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car11g01091 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010769 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 3 1 0 2 1 1 1 1 1 1 1 1 2 1 2 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4311 PF00010 HLH 6.60E-10 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g01091 Car_Chr11 FPKM 2.832209 4.150671 3.366235 4.546079 7.136209 6.54276 7.559646 3.860396 5.357698 4.668339
Car11g01091 Car_Chr00 FPKM 7.053563 7.833684 6.805241 8.009417 11.440568 10.025777 12.934468 16.516645 16.079676 16.282694