Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01101 ATGGCTCAGGTTCCATCTCCACCTCAAGTTCCCGGTACCGATCCAGCGGCCAATGGACAGCATGTCACGACGTCGTTGTATGTTGGAGATCTTGACGTGAATGTCACCGATTCGCAGCTCTATGATCTTTTTAATCAGGTGGGGCAGGTTGTTTCTGTTAGGGTTTGCAGGGATTTGACGACCCGCCGATCGCTTGGTTATGGCTATGTCAATTACAGCAGCCCTGTGGATGCAACAAGGGCATTAGATGCGCTAAACTTCACCCCTTTGAATGGAAATCCTATAAGGGTTATGTTTTCGCATCGTGACCCTAGCGTGCGGAAAAGTGGGTCTGGAAATATTTTTATCAAGAATTTGGACAAGGCAATTGATCACAAAGCATTGCATGATACATTTTCTGCATTTGGAAGCATTTTATCCTGCAAGGTTGCTACGGATGCATCCGGGCAGTCTAAAGGCTTTGGTTTTGTGCAATTTGATAAGGAGGAATCTGCCTTAAAAGCCATAGAGAAGTTGAATGGAATGCTGCTAAATGACAAGCAGGTGTTTGTGGGACCTTTCGTTCGCAAGCAAGAACGAGAAAGTGTCAGTGAGAAAACAAAGTTTAATAATGTTTTTGTTAAGAATCTGTCGGAAACTACATCTGATGAAGATTTACAGAATATGTTTGAGGAGTTTGGACCAATAACCAGTGTTGTGGTGATGAGGGATGGGGATGGAAAATCCAAATGCTTTGGCTTTGTAAACTTTGAGAATGCAGACGATGCTGCAAGGTCTGTTGAAGCACTTAATGGAAAGAAGGTTGATGGGAAAGAGTGGTATGTTGGAAAAGCCCAGAAGAAATCCGAAAGGGAAGTTGAATTGAAAAATCGGTTTGAGCAGAGTGTAAAAGAAGCTGCTGACAAGTATCAAGGTACAAACCTATATGTTAAGAATTTAGATGATAGCATTGACGATGATAAACTGAAGGAGTTATTCTCTGCGTTTGGAACCATTACCTCATACAAGGTTGTTATGCGAGACCCTAATGGAATGAGCAGAGGTTCTGGATTTGTTGCGTTCTCAACTCCTGAAGAAGCTGCAAGAGCTCTTGGAGAGATGAATGGAAGAATAATTGTGAGCAAACCTCTCTATGTTGCACTCGCGCAGAGGAAGGAAGATAGGAGAGCAAGGTTGCAGGCACAGTTTTCCCAATTGCAGCCAATGGCAATGGCATCTTCAGTTGCACCTCGTGGCATGCCAATGTATCCTCCAGGTGCTCCGGGTATCGGACAACAAATATTCTATGGACAAGCTCCGCCTGCTATTATTTCCTCACAGCCTGGCTTTGGTTATCAGCAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCCATGCCAAATTTCTTTGTACCAATGGTTCAGCCGGGCCAGCAAGGGCAAAGATCTGGTGGCAGACGTGCTGGTGCCATTCAGCAAACCCAGCAGCCCGGTCCAATGATGCAGCAGCAGATGCTCCCACGAGGACGTGTGTACCGTTATCCTCCTGGACGTGGAATGCCTGATCTTCCCATGCCTGGAGTTGCGGGAGGTATGTTCTCTGTTCCATACGAGATGGGTGGTATGCCCCCACGGGATACTGTTCACCCTCAACCAATTCCTGTTGGTGCTTTGGCTTCTGCCCTCGCAAATGCAGCTCCAGACCATCAACGAACGATGCTGGGGGAAAATCTGTATCCACTCGTGGAACAGCTAGAGGTTGATAATGCAGCAAAGGTGACCGGAATGCTACTGGAAATGGACCAAACTGAGGTTCTGCACTTGCTCGAGTCGCCGGAGGCTCTGAAAGCCAAGGTGGCGGAGGCTATGGAGGTTTTGAGAACTGTGGGTCAGCAGACGGGCAATGCAGCAGCTGATCAATTGGCTTCACTGTCCCTGAGTGACAACCTTGATGCCTAA 1941 47.19 MAQVPSPPQVPGTDPAANGQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSPVDATRALDALNFTPLNGNPIRVMFSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDASGQSKGFGFVQFDKEESALKAIEKLNGMLLNDKQVFVGPFVRKQERESVSEKTKFNNVFVKNLSETTSDEDLQNMFEEFGPITSVVVMRDGDGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKNRFEQSVKEAADKYQGTNLYVKNLDDSIDDDKLKELFSAFGTITSYKVVMRDPNGMSRGSGFVAFSTPEEAARALGEMNGRIIVSKPLYVALAQRKEDRRARLQAQFSQLQPMAMASSVAPRGMPMYPPGAPGIGQQIFYGQAPPAIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQPGQQGQRSGGRRAGAIQQTQQPGPMMQQQMLPRGRVYRYPPGRGMPDLPMPGVAGGMFSVPYEMGGMPPRDTVHPQPIPVGALASALANAAPDHQRTMLGENLYPLVEQLEVDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRTVGQQTGNAAADQLASLSLSDNLDA 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8668681 8673185 - Carg26401-RA Car11g01101 157054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01101 646 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 548 625 IPR002004 GO:0003723
Car11g01101 646 Pfam Poly-adenylate binding protein, unique domain 556 620 IPR002004 GO:0003723
Car11g01101 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 273 IPR000504 GO:0003723
Car11g01101 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 377 IPR000504 GO:0003723
Car11g01101 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 96 IPR000504 GO:0003723
Car11g01101 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 181 IPR000504 GO:0003723
Car11g01101 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 280 IPR000504 GO:0003723
Car11g01101 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 184 IPR000504 GO:0003723
Car11g01101 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 384 IPR000504 GO:0003723
Car11g01101 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 102 IPR000504 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01101 Car-Chr11:8668681 Car15g00530 Car-Chr15:2873752 0 dispersed
Car14g01347 Car-Chr14:11367644 Car11g01101 Car-Chr11:8668681 9.40E-16 dispersed
Car16g00021 Car-Chr16:220404 Car11g01101 Car-Chr11:8668681 2.37E-08 dispersed
Car11g01101 Car-Chr11:8668681 Car16g00315 Car-Chr16:1929225 4.71E-42 wgd
Car11g01101 Car-Chr11:8668681 Car19g00450 Car-Chr19:6228990 0 wgd
Car11g01101 Car-Chr11:8668681 Car04g00450 Car-Chr4:2548265 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01101 K13126 - csv:101223017 1101.66