Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car11g01101 | ATGGCTCAGGTTCCATCTCCACCTCAAGTTCCCGGTACCGATCCAGCGGCCAATGGACAGCATGTCACGACGTCGTTGTATGTTGGAGATCTTGACGTGAATGTCACCGATTCGCAGCTCTATGATCTTTTTAATCAGGTGGGGCAGGTTGTTTCTGTTAGGGTTTGCAGGGATTTGACGACCCGCCGATCGCTTGGTTATGGCTATGTCAATTACAGCAGCCCTGTGGATGCAACAAGGGCATTAGATGCGCTAAACTTCACCCCTTTGAATGGAAATCCTATAAGGGTTATGTTTTCGCATCGTGACCCTAGCGTGCGGAAAAGTGGGTCTGGAAATATTTTTATCAAGAATTTGGACAAGGCAATTGATCACAAAGCATTGCATGATACATTTTCTGCATTTGGAAGCATTTTATCCTGCAAGGTTGCTACGGATGCATCCGGGCAGTCTAAAGGCTTTGGTTTTGTGCAATTTGATAAGGAGGAATCTGCCTTAAAAGCCATAGAGAAGTTGAATGGAATGCTGCTAAATGACAAGCAGGTGTTTGTGGGACCTTTCGTTCGCAAGCAAGAACGAGAAAGTGTCAGTGAGAAAACAAAGTTTAATAATGTTTTTGTTAAGAATCTGTCGGAAACTACATCTGATGAAGATTTACAGAATATGTTTGAGGAGTTTGGACCAATAACCAGTGTTGTGGTGATGAGGGATGGGGATGGAAAATCCAAATGCTTTGGCTTTGTAAACTTTGAGAATGCAGACGATGCTGCAAGGTCTGTTGAAGCACTTAATGGAAAGAAGGTTGATGGGAAAGAGTGGTATGTTGGAAAAGCCCAGAAGAAATCCGAAAGGGAAGTTGAATTGAAAAATCGGTTTGAGCAGAGTGTAAAAGAAGCTGCTGACAAGTATCAAGGTACAAACCTATATGTTAAGAATTTAGATGATAGCATTGACGATGATAAACTGAAGGAGTTATTCTCTGCGTTTGGAACCATTACCTCATACAAGGTTGTTATGCGAGACCCTAATGGAATGAGCAGAGGTTCTGGATTTGTTGCGTTCTCAACTCCTGAAGAAGCTGCAAGAGCTCTTGGAGAGATGAATGGAAGAATAATTGTGAGCAAACCTCTCTATGTTGCACTCGCGCAGAGGAAGGAAGATAGGAGAGCAAGGTTGCAGGCACAGTTTTCCCAATTGCAGCCAATGGCAATGGCATCTTCAGTTGCACCTCGTGGCATGCCAATGTATCCTCCAGGTGCTCCGGGTATCGGACAACAAATATTCTATGGACAAGCTCCGCCTGCTATTATTTCCTCACAGCCTGGCTTTGGTTATCAGCAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCCATGCCAAATTTCTTTGTACCAATGGTTCAGCCGGGCCAGCAAGGGCAAAGATCTGGTGGCAGACGTGCTGGTGCCATTCAGCAAACCCAGCAGCCCGGTCCAATGATGCAGCAGCAGATGCTCCCACGAGGACGTGTGTACCGTTATCCTCCTGGACGTGGAATGCCTGATCTTCCCATGCCTGGAGTTGCGGGAGGTATGTTCTCTGTTCCATACGAGATGGGTGGTATGCCCCCACGGGATACTGTTCACCCTCAACCAATTCCTGTTGGTGCTTTGGCTTCTGCCCTCGCAAATGCAGCTCCAGACCATCAACGAACGATGCTGGGGGAAAATCTGTATCCACTCGTGGAACAGCTAGAGGTTGATAATGCAGCAAAGGTGACCGGAATGCTACTGGAAATGGACCAAACTGAGGTTCTGCACTTGCTCGAGTCGCCGGAGGCTCTGAAAGCCAAGGTGGCGGAGGCTATGGAGGTTTTGAGAACTGTGGGTCAGCAGACGGGCAATGCAGCAGCTGATCAATTGGCTTCACTGTCCCTGAGTGACAACCTTGATGCCTAA | 1941 | 47.19 | MAQVPSPPQVPGTDPAANGQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSPVDATRALDALNFTPLNGNPIRVMFSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDASGQSKGFGFVQFDKEESALKAIEKLNGMLLNDKQVFVGPFVRKQERESVSEKTKFNNVFVKNLSETTSDEDLQNMFEEFGPITSVVVMRDGDGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKNRFEQSVKEAADKYQGTNLYVKNLDDSIDDDKLKELFSAFGTITSYKVVMRDPNGMSRGSGFVAFSTPEEAARALGEMNGRIIVSKPLYVALAQRKEDRRARLQAQFSQLQPMAMASSVAPRGMPMYPPGAPGIGQQIFYGQAPPAIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQPGQQGQRSGGRRAGAIQQTQQPGPMMQQQMLPRGRVYRYPPGRGMPDLPMPGVAGGMFSVPYEMGGMPPRDTVHPQPIPVGALASALANAAPDHQRTMLGENLYPLVEQLEVDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRTVGQQTGNAAADQLASLSLSDNLDA | 646 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 8668681 | 8673185 | - | Carg26401-RA | Car11g01101 | 157054 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car11g01101 | 646 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 548 | 625 | IPR002004 | GO:0003723 | |
Car11g01101 | 646 | Pfam | Poly-adenylate binding protein, unique domain | 556 | 620 | IPR002004 | GO:0003723 | |
Car11g01101 | 646 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 205 | 273 | IPR000504 | GO:0003723 | |
Car11g01101 | 646 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 308 | 377 | IPR000504 | GO:0003723 | |
Car11g01101 | 646 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 26 | 96 | IPR000504 | GO:0003723 | |
Car11g01101 | 646 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 114 | 181 | IPR000504 | GO:0003723 | |
Car11g01101 | 646 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 203 | 280 | IPR000504 | GO:0003723 | |
Car11g01101 | 646 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 112 | 184 | IPR000504 | GO:0003723 | |
Car11g01101 | 646 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 306 | 384 | IPR000504 | GO:0003723 | |
Car11g01101 | 646 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 24 | 102 | IPR000504 | GO:0003723 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car11g01101 | Car-Chr11:8668681 | Car15g00530 | Car-Chr15:2873752 | 0 | dispersed | |
Car14g01347 | Car-Chr14:11367644 | Car11g01101 | Car-Chr11:8668681 | 9.40E-16 | dispersed | |
Car16g00021 | Car-Chr16:220404 | Car11g01101 | Car-Chr11:8668681 | 2.37E-08 | dispersed | |
Car11g01101 | Car-Chr11:8668681 | Car16g00315 | Car-Chr16:1929225 | 4.71E-42 | wgd | |
Car11g01101 | Car-Chr11:8668681 | Car19g00450 | Car-Chr19:6228990 | 0 | wgd | |
Car11g01101 | Car-Chr11:8668681 | Car04g00450 | Car-Chr4:2548265 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car11g01101 | K13126 | - | csv:101223017 | 1101.66 |