Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01109 ATGGCGATTTCCACCACTTTCTCCTTCTCCATCGTCGTCTTTCTACCGCTGTTCCTATGTTTTTCCTCATCTTCATCGGCTTCTGATTCGTCCACCTTTTCCATCATCGATGAAAACGCTAAACACCACTTGGATATCCAAATCGGATCCTCGCAGCGCTCCGATGAGGAGGTTGCGGCTCTGTACGAGTCGTGGTTGGTTCACAATGGAAAGGCTTACAACGCTCTTGGCGAGAAGGAGAGGCGATTTGAGATTTTCAAGGATAATCTCAGGTTCATTGATGAACATAACAGGGAATCGCGGAGTTATAAGGTTGGATTGAACCGTTTTGCCGATCTCTCCAACGAGGAGTATCGCGCCATGTTTCTTAGCGGTCGATTGTCCCGAAAGAACCGCCTCTCCGCAACTAAGAGTCGTAGATATGCGATCGCGCTCGGCGATGATCTGCCGGATCATGTTGATTGGAGGAAGAAGGGCGCTGTTGCGGATGTTAAAGATCAAGGACAGTGTGGGAGCTGTTGGGCTTTCTCAACAGTTGCTGCAGTGGAAGGAATAAATCAAATCACCACCGGTGAATTGATCTCTCTGTCGGAGCAGGAGCTTGTAGACTGTGATAGATCATATAACATGGGGTGCAACGGTGGTCTTATGGACTATGCTTTCCAGTTCATCATTGACAATGGTGGAATTGACACTGAGGAAGATTACCCTTACAAGGGCAGAGATGGCACTTGCGATCCCATCCGGAAAAATGCTAAAGCTGTAACCATAGATGGATATGAAGATGTTCCTGAGAATGATGAGAGCTCCTTGAAAAAGGCTGTGGCTAATCAACCTGTTAGTGTTGCCATTGAAGCTGGCGGCAGGGCTTTCCAACTTTACCAATCGGGTGTCTTCAACGGACTTTGTGGAACCGAACTGGATCATGGTGTTGTTGCTGTTGGATATGGCACAGAAGATGGAAAAGATTATTGGATTGTGAGGAATTCATGGGGTAAAAACTGGGGAGAGAATGGTTATATCAAGTTGGAGAGGAATGTAGGCAACATTACCACAGGCAAGTGTGGTATAGCCATAGAGGCTTCATACCCCACCAAGACAGGAAAGAACCCACCAAAACCTGCCCCTTCTCCGCCATCCCCTGTGAGTCCCCCTAATCAATGCGACGAATACTTCTCGTGCCAGGAAGGAACTACCTGTTGCTGTATCTATAAGTATGGAAGTACCTGCTTTGGTTGGGGATGCTGCCCGCTCGAGTCTGCAACCTGTTGCGACGACCATTACAGTTGCTGCCCCCATGAATACCCCATCTGTGACCTTGATGCAGGAACTTGCCTGAAGAGCAAAGGCAGCACGAGCGGAGTCGAACTGCTGAAGCGCGTTCCTGCTAAATATAACAGGGGCTGCGCTCAGAAGCTTGGCAAGATGTCCACTGGTGCTTGA 1443 48.65 MAISTTFSFSIVVFLPLFLCFSSSSSASDSSTFSIIDENAKHHLDIQIGSSQRSDEEVAALYESWLVHNGKAYNALGEKERRFEIFKDNLRFIDEHNRESRSYKVGLNRFADLSNEEYRAMFLSGRLSRKNRLSATKSRRYAIALGDDLPDHVDWRKKGAVADVKDQGQCGSCWAFSTVAAVEGINQITTGELISLSEQELVDCDRSYNMGCNGGLMDYAFQFIIDNGGIDTEEDYPYKGRDGTCDPIRKNAKAVTIDGYEDVPENDESSLKKAVANQPVSVAIEAGGRAFQLYQSGVFNGLCGTELDHGVVAVGYGTEDGKDYWIVRNSWGKNWGENGYIKLERNVGNITTGKCGIAIEASYPTKTGKNPPKPAPSPPSPVSPPNQCDEYFSCQEGTTCCCIYKYGSTCFGWGCCPLESATCCDDHYSCCPHEYPICDLDAGTCLKSKGSTSGVELLKRVPAKYNRGCAQKLGKMSTGA 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8810869 8813831 + Carg26848-RA Car11g01109 157062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01109 480 Pfam Papain family cysteine protease 149 365 IPR000668 GO:0006508|GO:0008234
Car11g01109 480 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 307 317 IPR025660 -
Car11g01109 480 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 167 178 IPR000169 -
Car11g01109 480 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 324 343 IPR025661 -
Car11g01109 480 Pfam Granulin 399 446 IPR000118 -
Car11g01109 480 Pfam Cathepsin propeptide inhibitor domain (I29) 62 118 IPR013201 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01109 K25900 RD21; cysteine proteinase RD21 [EC:3.4.22.-] - csv:101222543 793.882
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g01109 Car19g00445 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01605 Car-Chr1:13208394 Car11g01109 Car-Chr11:8810869 3.39E-126 dispersed
Car02g00159 Car-Chr2:920727 Car11g01109 Car-Chr11:8810869 1.93E-23 dispersed
Car03g00865 Car-Chr3:6942592 Car11g01109 Car-Chr11:8810869 3.60E-171 dispersed
Car05g00040 Car-Chr5:216021 Car11g01109 Car-Chr11:8810869 2.27E-109 dispersed
Car06g01474 Car-Chr6:10433636 Car11g01109 Car-Chr11:8810869 1.20E-24 dispersed
Car07g00685 Car-Chr7:3495854 Car11g01109 Car-Chr11:8810869 1.26E-170 dispersed
Car10g00688 Car-Chr10:3566241 Car11g01109 Car-Chr11:8810869 4.08E-78 dispersed
Car11g01109 Car-Chr11:8810869 Car11g01424 Car-Chr11:11628123 3.24E-117 dispersed
Car12g00036 Car-Chr12:174367 Car11g01109 Car-Chr11:8810869 7.01E-99 dispersed
Car12g00414 Car-Chr12:2643948 Car11g01109 Car-Chr11:8810869 2.55E-126 transposed
Car12g00562 Car-Chr12:3758179 Car11g01109 Car-Chr11:8810869 3.41E-34 transposed
Car01g01420 Car-Chr1:12273242 Car11g01109 Car-Chr11:8810869 0 wgd
Car11g01109 Car-Chr11:8810869 Car19g00445 Car-Chr19:6186291 5.01E-124 wgd
Car11g01109 Car-Chr11:8810869 Car09g00214 Car-Chr9:1061901 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g605 . . . . . Bpe12g00293 . . Cmo19g00605 . . . . . . Cpe04g00295 Cpe15g00476 . . . . . . . Cla02g00624 Cam02g0658 Cec02g0661 Cco02g0685 Clacu02g0666 . Cre02g0979 . . Cone3ag0991 Cone10ag1012 Lsi03g00521 Csa07g00735 . Cme01g00073 . . Bda15g00848 Bda14g01450 . . Bma03g01355 Bma08g00518 . . . Cma11g01732 . Car11g01109 Car19g00445 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001585 7 2 1 3 5 2 3 1 2 1 1 1 2 2 2 1 0 5 4 2 2 2 2 2 2 1 2 5 3 3 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g01109 Car_Chr11 FPKM 16.918919 17.445269 10.88661 10.552039 56.747665 54.717678 52.506878 5.591624 5.739984 5.617564