Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01111 ATGTCGATATATTCTATTCAGGGTCAACCTCTGGAAGTCATCGTTATTGGATGCACAAAGTTGAAAGATACGGAATGGATTTCAAGGCAGGATCCATATGTGTGCCTTGAATATGGTAGCACCAATTTCCGCACGACCACTTGTAGAGATGGTGGCAGAAATCCTATATTCCAAGAGAAATTTGTGTTCTCTCTAATTGAAGGGATTAGAGAGATTAATGTTACTGTTTGGAATAGCAATACAGTTACTTATGATGACTTCATTGGCAATGGAAAAATTCAATTGGCTAAGGTTCTAGCAGAAGGTTATGATGATAGCACATGGTCACTTCAAACAAAAACTGGCAGACATGCTGGGGAAGTACGATTGATTCTTCATTTTGCAACAGCCGATAGACTACCAGCAAATTTTGCACCGTCGGCACCGCCCTTTCACGCGCCTCCGCCATCCCAACTTGCCATGTACGCCACGATGCCATCGGCACACCCTACAGCCTACCCTCATCCTCATACACCCTATGCATTTTCATCTCCCTTTCCTTCTTACCCACCCAACAATGGAGCGTATCAAACATCCATGTATGCCTCCCCGTTTCTATCGGGGTATCCTCCATCGTCATACCCGCCGCCTTCCTCGGCTTATCCTCACGCTCCATACCCACCACATCCACAAGCCTCACCATTCTATCCTCCAGGCCCTTATCCTGGAGTTTATCCCCCACCACAGTATTGA 732 46.17 MSIYSIQGQPLEVIVIGCTKLKDTEWISRQDPYVCLEYGSTNFRTTTCRDGGRNPIFQEKFVFSLIEGIREINVTVWNSNTVTYDDFIGNGKIQLAKVLAEGYDDSTWSLQTKTGRHAGEVRLILHFATADRLPANFAPSAPPFHAPPPSQLAMYATMPSAHPTAYPHPHTPYAFSSPFPSYPPNNGAYQTSMYASPFLSGYPPSSYPPPSSAYPHAPYPPHPQASPFYPPGPYPGVYPPPQY 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8824023 8826674 + Carg26850-RA Car11g01111 157064

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01111 243 ProSiteProfiles C2 domain profile. 1 109 IPR000008 -
Car11g01111 243 Pfam C2 domain 11 108 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01111 - - - csv:101217489 306.219
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01237 Car-Chr2:8377141 Car11g01111 Car-Chr11:8824023 1.70E-15 dispersed
Car11g01111 Car-Chr11:8824023 Car15g01093 Car-Chr15:8611067 1.75E-15 dispersed
Car18g01170 Car-Chr18:11439067 Car11g01111 Car-Chr11:8824023 8.44E-06 dispersed
Car12g00564 Car-Chr12:3772893 Car11g01111 Car-Chr11:8824023 9.09E-118 transposed
Car01g01418 Car-Chr1:12266356 Car11g01111 Car-Chr11:8824023 7.90E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g608 . . . . . Bpe12g00295 . . Cmo19g00604 Cmo11g01385 . . . . . Cpe04g00297 Cpe15g00474 . . . . . . . Cla02g00626 Cam02g0659 Cec02g0663 Cco02g0686 Clacu02g0667 . Cre02g0980 . . Cone3ag0993 Cone10ag1014 Lsi03g00523 Csa07g00733 . Cme01g00075 . . . . . . . . . . . Cma11g01729 Cma19g00586 Car11g01111 . . . . . . . . . . . . . . . . . . . Chy01g00081 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008674 0 3 0 0 1 0 2 0 1 1 1 0 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 4 4 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g01111 Car_Chr11 FPKM 27.634409 29.224361 12.253772 16.699776 7.459495 8.309831 9.27346 5.370348 5.837517 7.979834