Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01114 ATGGATCTCCGGTTACCTTTTCTCCTCTTCCTTTTCTTGCAGGCTGTTTCCGGCCTCCTCCTCGCCGCTGCGTCCAACGTTGCCTACCCCTCCGTCGTCGATACTGGAGTCGGTGATTGCTCAGTTTCCGACGGCGGCGATGGCAGCCTCACTCCTATCCGTCGAGAAGTTTACGATAATGGACGAATCATTGACATCAGTCATCGGTTTACTGTGGATATGCCGTCTTGGGAATCTGACGAAGGGCTTGGCCAGTTTCTGTGGCTTCCGAAGAGCATGAAGAATGGTTCGCTTGCTAATAACTCTGAAATGAAGCTTCCGGCTCACACTGGTACGCACGTCGATGCGCCTGGTCATGTTTTTGATCATTACTTTGATGCGGGATTCGATGTTGACACACTCGACTTGGGAGTCCTCAATGGTCCTGGACTGTTGGTTGACGTTCCAAGGGATAAGAACATTACTGCTGAAGTCATGAAGTCTTTGAACATTCCCAAAGGAGTACGCCGTGTACTCTTCAGAACATTAAATACTGACAGAGGTCTCATGTGGAAAAAGGAGTTTGACACGAGCTATGTTGGATTTATGAAGGATGGAGCAAAATGGCTTGTAGACAACACTGATATCAAACTAGTTGGAATTGACTACTTATCAGTTGCTGCCTTTGATGATCTTATTCCGTCTCATCTCGAATTTTTAGAAGGCAGGGAAACCATTCTTGTCGAAGGCTTAAAGCTTGATGGCGTCCAGCCGGGATTATATTCGATTCATTGCTTACCTCTTAGGTTGCTCGGCGCCGAGGGGTCGCCAATCAGATGCATTCTAATCAAGTAG 834 47.6 MDLRLPFLLFLFLQAVSGLLLAAASNVAYPSVVDTGVGDCSVSDGGDGSLTPIRREVYDNGRIIDISHRFTVDMPSWESDEGLGQFLWLPKSMKNGSLANNSEMKLPAHTGTHVDAPGHVFDHYFDAGFDVDTLDLGVLNGPGLLVDVPRDKNITAEVMKSLNIPKGVRRVLFRTLNTDRGLMWKKEFDTSYVGFMKDGAKWLVDNTDIKLVGIDYLSVAAFDDLIPSHLEFLEGRETILVEGLKLDGVQPGLYSIHCLPLRLLGAEGSPIRCILIK 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8860149 8863555 - Carg26853-RA Car11g01114 157067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01114 277 Gene3D Putative cyclase 57 276 IPR037175 GO:0004061|GO:0019441
Car11g01114 277 Pfam Putative cyclase 64 219 IPR007325 GO:0004061|GO:0019441
Car11g01114 277 PANTHER KYNURENINE FORMAMIDASE-LIKE ISOFORM X1 5 277 - -
Car11g01114 277 SUPERFAMILY Putative cyclase 61 276 IPR037175 GO:0004061|GO:0019441
Car11g01114 277 PANTHER CYCLASE-LIKE PROTEIN 2 5 277 IPR007325 GO:0004061|GO:0019441
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01114 - - - mcha:111017408 485.337
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g613 . . . . . . . . . Cmo11g01388 . . . . . Cpe04g00300 . . . . . . . . Cla02g00629 Cam02g0663 Cec02g0667 Cco02g0691 Clacu02g0671 Cmu02g0665 Cre02g0984 . . . . Lsi03g00526 Csa07g00729 . Cme01g00079 . . . Bda14g01456 . . Bma03g01359 . . . . . . Car11g01114 . . . . . . . . . . . . . . . . . Lsi03g01043 . Chy01g00085 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002722 3 2 2 2 2 2 1 2 2 2 1 2 0 2 2 1 2 2 1 2 2 2 2 2 2 1 2 3 4 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g01114 Car_Chr11 FPKM 16.214611 16.885077 6.530687 5.769288 5.409266 6.102824 5.632314 7.003277 6.089407 6.39583
Car11g01114 Car_Chr00 FPKM 20.625412 21.702227 10.983629 12.76369 11.701627 12.401375 12.336268 9.436562 8.833421 9.745491