Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01117 ATGCAGTCGCTGCTCTTGCCGGTAGCTCGCACCGGTGCCTTCCCGACCGCCGCAGTCTATTCATCGGATTTTCACCTCAGCCGCTTCCATTGCCGGCCTTTCTCTGTACGAGGCCGTCAAGCGTCCGATCTCAATTCTCCTTCCAATTCACTTCCTTCGTTAAGCGCCATTCGATCTTCTTCTTCTTCTTCTTCTTCGTTGTTGCTTTCAAAGACTTTTGGTACTCTGGAGCATAGGAGAGGAAAATTTTGTTTGGAAACACGCGCTTCTTCTAGTTCCATTTCGCCGACGGTTCCCCCAATTGATGAGGCTGAAAAGTTGAAACTGGCTCAGGTGGCAAAGAGATTAGAGAAGACATCGAGGTACTTCAAGAGGTTGGGTAATCTTGGATTTTGGGGACAGTTGGTGCTCACTGTTGTGGCTGCCGTTATTCTTTCATTTTCTGTTGTCATCACCGGGAAAATTACATCACCTGCCACTTTTTATGCTACTGCTGGTGGTATTGTGGCAGCTTTCATTTCTGTATTTTGGTCCTTTGGTTACATTCGGCTTTCTGATAAACTTCGACGAACTGCAAACCAGCCCTCCAAGGCTCCTCCTCGGGCCGATGTCGTGAATAGTCTAAAAAATGGAATTGTGATGAACCTTCTGGGCATGGGTGCTGCCATTCTGGGGATGCAAGCGTCGGTGGGATTGTTAGTTGCTAAGGCTCTTACTTCCTCTGCAACTCCATATTTCCAGGCAGCCTCGCCTGGGAATAGCCCTGTTCTTGCTTTGGATGTATTCTTGGTACAGGCTTCTGCAAACACTATCCTCTCGCATTTCCTCGGGCTCGTTTTCTCGTTGGAGCTACTGCGGTCGGTGACA 867 48.79 MQSLLLPVARTGAFPTAAVYSSDFHLSRFHCRPFSVRGRQASDLNSPSNSLPSLSAIRSSSSSSSSLLLSKTFGTLEHRRGKFCLETRASSSSISPTVPPIDEAEKLKLAQVAKRLEKTSRYFKRLGNLGFWGQLVLTVVAAVILSFSVVITGKITSPATFYATAGGIVAAFISVFWSFGYIRLSDKLRRTANQPSKAPPRADVVNSLKNGIVMNLLGMGAAILGMQASVGLLVAKALTSSATPYFQAASPGNSPVLALDVFLVQASANTILSHFLGLVFSLELLRSVT 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8885157 8889484 + Carg26856-RA Car11g01117 157070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01117 289 Pfam Protein of unknown function (DUF3611) 114 288 IPR022051 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01117 - - - cmax:111486084 487.263
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g01117 Car19g00442 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01117 Car-Chr11:8885157 Car19g00442 Car-Chr19:6154639 9.33E-173 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g621 . . . . . Bpe12g00299 . . Cmo19g00596 Cmo11g01391 . . . . . Cpe04g00303 Cpe15g00468 . . . . . . . Cla02g00634 Cam02g0667 Cec02g0673 Cco02g0697 Clacu02g0675 Cmu02g0669 Cre02g0990 Cone12ag1072 Cone8ag1107 . . Lsi03g00530 . . . . . Bda15g00843 . . . Bma03g01367 Bma08g00497 . . . Cma11g01724 . Car11g01117 Car19g00442 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006867 1 1 0 2 2 1 2 1 1 1 0 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 37