Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01121 ATGATGAATTCTGAAGAAGCTCCTTGCCATGTCTTCCTTGTATGCTATCCCAGCCAAGGACACATCAACCCCACTCTAAGACTTGCCAAGAAACTCGCCGCCGAGGGCCTTCTCGTCACCATTTCCACGGCGGTGCATTTCGGCAAAACACTGCAGAAAGCTGGAAGTATCGGCGCCGGCGACTGTCCCACTCCGGTCGGCAATGGGTTCATCAGATTTGAATTCTTCGAAGATGGCCTCCAAGAGATCAATCCCAAGGATATGAACTTGACCCGCTATAACAACCAGCTCGAGCTCTCCGGCCGGCCGTCGCTCACCGGCCTGATCAAGAACCAAACAGCCGAAAACCGCCCTGTTTCTTGCCTGATTCTGAACCCCTTTTTTCCATGGACTAGCGAAGTTGCTAAGGAGCTCGAAATCCCCTGTGCCGTTCTTTGGGTTCAATCATGCGCTGTGTTCTCAATTTACTATCACTGTTTCCACGAATCCTTCCCGTTCCCTTCTGAATTGGAACCCAAAATCGATGTTCATCTCCCAATTTTGCCACTTTTGAAGAACGACGAAATCCCAAGCTTCTTGCATCCAAATAACATCTATGGCGTTTTGGGGAATGTTCTGTTATCCCAATTCAGTAAATTATCAATACCCTTTTGTATTTTGATGGATACTTTCAATGAACTGGAGAAAGATATCATCAATTACATGTCTAATATCATTCCTTTGAAACCCATTGGCCCATTGTTCTTAAACCCACAAAATGTGGAAACAGAGGTCTCTGTCGACTGCTTAAAAGCAGAGGATTGTATGGAATGGCTGAATTCAAAGCCCCCACAATCCGTTGTGTACGTTTCATTTGGAAGCATCGTTTATTTGAAACAAGAGCAAATAGACGAGCTCGCTTACGGGCTGTGCAATTCAGGGTTCTCATTCTTATGGGTTATGAAGCCGCCCAATGAAGCTTTGGGGTTAAAGGGCCATATTTTGCCAGAAGGGGTAATGGAGAAAGCAGGGGAGAGGGGAAAAGTGGTGCAATGGAGTTCGCAAGAGAGGGTTTTGTCGCATGAATCTGTTGGGTGCTTTATGACGCATTGTGGGTGGAATTCATCGGTGGAAGCCATCGGTACCGGCGTGCCGGTGGTGGCGTTTCCGCAGTGGGGGGATCAGGTGACCAATGCTAAGTTTTTGGTGGAGGATTATGGAGTTGGGGTGAGGCTGTCGCGTGGTGCAGAGGCAAATGAGTTGATTTCCAGGGATGAGATTGTGAGATGCATATCGGAGGTGATGACCCGCGATAGCAGCGGAGGAGAATTCAGGCGGAATGCTTTGAAATTGAAGCAGGCAGCGGCGGCGGCCGTGGTGGACGGCGGAGCCTCCCACCAGAACATCCAAGAGTTTGTTGATGAGATTAAGAAGAGATGTGTGAGAGGCAACTTTTAG 1437 48.43 MMNSEEAPCHVFLVCYPSQGHINPTLRLAKKLAAEGLLVTISTAVHFGKTLQKAGSIGAGDCPTPVGNGFIRFEFFEDGLQEINPKDMNLTRYNNQLELSGRPSLTGLIKNQTAENRPVSCLILNPFFPWTSEVAKELEIPCAVLWVQSCAVFSIYYHCFHESFPFPSELEPKIDVHLPILPLLKNDEIPSFLHPNNIYGVLGNVLLSQFSKLSIPFCILMDTFNELEKDIINYMSNIIPLKPIGPLFLNPQNVETEVSVDCLKAEDCMEWLNSKPPQSVVYVSFGSIVYLKQEQIDELAYGLCNSGFSFLWVMKPPNEALGLKGHILPEGVMEKAGERGKVVQWSSQERVLSHESVGCFMTHCGWNSSVEAIGTGVPVVAFPQWGDQVTNAKFLVEDYGVGVRLSRGAEANELISRDEIVRCISEVMTRDSSGGEFRRNALKLKQAAAAAVVDGGASHQNIQEFVDEIKKRCVRGNF 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8943311 8944747 - Carg26986-RA Car11g01121 157074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01121 478 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 265 407 IPR002213 GO:0008194
Car11g01121 478 ProSitePatterns UDP-glycosyltransferases signature. 345 388 IPR035595 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01121 - - K23279 csv:101215819 733.406
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01121 Car-Chr11:8943311 Car19g00437 Car-Chr19:6127091 0 dispersed
Car20g00447 Car-Chr20:2529728 Car11g01121 Car-Chr11:8943311 6.03E-29 dispersed
Car11g01120 Car-Chr11:8917056 Car11g01121 Car-Chr11:8943311 1.56E-90 tandem
Car11g01121 Car-Chr11:8943311 Car11g01122 Car-Chr11:8954619 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g636 . . . . . . . . Cmo19g00592 Cmo11g01395 . . . . . . Cpe15g00464 Bhi05g01104 . . . . . . Cla02g00642 . . . . . . . . . . Lsi03g00537 Csa07g00717 . Cme01g00090 . . . . . . . . . . . Cma11g01720 . Car11g01121 . . . . . . . . . . . . . . . . . . . Chy01g00098 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000463 3 5 1 1 1 4 5 5 5 4 5 5 4 3 3 5 5 4 4 5 4 3 4 5 5 5 3 5 4 3 118
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g01121 Car_Chr11 FPKM 1.340772 1.897629 1.377255 1.569967 37.195396 35.538784 33.567402 0.554387 0.631109 0.5737