Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01125 TCTCGTTCTCCTCCCCCTCCTCCTCCTCCTCCGGATTCCTTCTGCGGCAAACTCTGCAACTTCCTCATCATCTCTCCGCCGCTCGGAATCGGATTCGTTTCGTCTCCCATGGACGCGTCGGAGTACCTCAACCCCTCCGTCCGAACTTCGAAGAAGCGCGACTTAGAGGATCAATCTCTGCAACTGGCCTCCGCCAATAAGAGAGTGGCGCTTGGCGAGATCACCAACTCGTTGATCTTCAATACCAGACAGTGCTCGCTTTCTGATCAGGAGATGACGGATAAGGATATGGACGAGGAAGAACGTCCCGATGGAACCTCTGTTGATTGTTCGAAGAAGTGTCGTTCTGCATCTAGCATCTATAACCACCTTCGATCTCTGGAGATGGAACTGCACATGAAGGTACTGCCCAATAACATCGTAAAGGCTCAAAATGGTGATTCCATTTTAAGTTTCACTTATATGCGAGAAATTCTTGTGGATTGGTTAGTAGAGGTTGCTGAAGAATACAAGCTTGTATCGGACACCCTATATCTCACCATATCACATATGGACATATACTTATCCTCGCAAGCTGTTGACAAAAGCAAGCTGCAGCTTCTTGGTGTTTGTTGCATGCTTCTTGCATCAAAGTATGAAGAGATCAATCCTCCAAATGTTGAAGACTTCTGCTATATAACAGACAATACATATACCAAAGAACAGGTATTGAGTATGGAGAGAGAAGTACGCAAATTCTTGAGCTGTGAAGGTGCCCCCACCATAAAAAATTTTCTCAGGCAAGAATGCTCTTCAACTATCTTATATTTAGTACCTAAAAACATATATTTCTTCTTTTCTCTATATGCGGTTAACTCATTGTTGCTTTCCTACAGAATATTCACACAAGTTTCTTTGGAAAATTGGAAGGCTCCAGACTTGCAATTCGAGTTTTTGAGTTGTTACCTTGCGGAGCTAAGTTTGTTAGATCACCGTTTTGCACAGTTCTTACCATCAATGGTCGCTGCATCAGCTATTTTTCTTTCTAGATTCACAATTCAACCAGATAAACATCCTTGGTGTTTAGCGCTGCAACATTACTCCGGTTACAGACCATCTGAACTGAAGGAATGCATTCTTGCCATTCATCGCTTGCAATTAAATAGAAAAGGAAGCTCTTTACAAGCAATAAGAACCAAGTATAAGCAGCATAAGTTCAAGTGTGTGGCCGAGTTATCTTCTCCCTCAGAAATTCCTGCATATTACTTTGAGGACATTGACAAGCAATCATTCAACAGGTTCTTGAGAACTTAA 1293 42.69 SRSPPPPPPPPDSFCGKLCNFLIISPPLGIGFVSSPMDASEYLNPSVRTSKKRDLEDQSLQLASANKRVALGEITNSLIFNTRQCSLSDQEMTDKDMDEEERPDGTSVDCSKKCRSASSIYNHLRSLEMELHMKVLPNNIVKAQNGDSILSFTYMREILVDWLVEVAEEYKLVSDTLYLTISHMDIYLSSQAVDKSKLQLLGVCCMLLASKYEEINPPNVEDFCYITDNTYTKEQVLSMEREVRKFLSCEGAPTIKNFLRQECSSTILYLVPKNIYFFFSLYAVNSLLLSYRIFTQVSLENWKAPDLQFEFLSCYLAELSLLDHRFAQFLPSMVAASAIFLSRFTIQPDKHPWCLALQHYSGYRPSELKECILAIHRLQLNRKGSSLQAIRTKYKQHKFKCVAELSSPSEIPAYYFEDIDKQSFNRFLRT 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8994451 8997546 - Carg26990-RA Car11g01125 157078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01125 430 Pfam Cyclin, N-terminal domain 120 247 IPR006671 -
Car11g01125 430 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 363 430 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car11g01125 430 Pfam Cyclin, C-terminal domain 304 407 IPR004367 -
Car11g01125 430 MobiDBLite consensus disorder prediction 89 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01125 K06627 CCNA; cyclin-A - csv:101213896 568.155
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g01125 Car19g00427 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01125 Car-Chr11:8994451 Car04g01296 Car-Chr4:7500349 3.79E-78 dispersed
Car01g01408 Car-Chr1:12228308 Car11g01125 Car-Chr11:8994451 9.19E-104 wgd
Car11g01125 Car-Chr11:8994451 Car12g00532 Car-Chr12:3524768 2.56E-76 wgd
Car11g01125 Car-Chr11:8994451 Car19g00427 Car-Chr19:6071411 1.11E-177 wgd
Car11g01125 Car-Chr11:8994451 Car05g00137 Car-Chr5:681997 1.53E-101 wgd
Car11g01125 Car-Chr11:8994451 Car09g00224 Car-Chr9:1270216 1.22E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g655 . . . . . . . . Cmo19g00580 Cmo11g01399 . . . . . Cpe04g00309 Cpe15g00455 Bhi05g01057 Tan02g1772 . Lac12g0195 . . . Cla02g00659 Cam02g0694 Cec02g0707 Cco02g0726 Clacu02g0700 Cmu02g0698 Cre02g1013 . . . . Lsi03g00554 Csa07g00705 . Cme01g00101 . . . . . . . . . . . Cma11g01716 Cma19g00567 Car11g01125 Car19g00427 . . . . . . . . . . . . . . . . . . Chy01g00109 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012970 0 2 0 0 0 1 2 1 1 0 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g01125 Car_Chr11 FPKM 0.532385 0.636808 0.531797 0.514422 1.86519 1.960328 1.582047 1.008724 0.802617 0.730452