Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01142 ATGGAGCAACTAAGAGGCCCCATTGTTGAAGATGGAGATCAATGGAGCTGTCTCAATGGAGTTTTCACAGCTGATGAAGAAGCTGCAACATTCATGGCTCAACTTTTCAACTCCACAGCTCCTGACCCTTTCATGGCTGCCCTTGATCTTCATAATAATTATTGCAACCCCATAAACTCTTGCTTGGGAGAGCTTGGAAATGATAACAATGGTGGTTTCAATCTTGAAGAGGAGGACTCCAATTTGCAGGCTTGTTATGAAGCTGAGTTGATGAAATTACCTGAAGAAGAAGCTGCCATGGATCAAAAGAGGCATACCCAACTTGAGATCAATTGCAAGAAACGATCGAGGGGATCTCGGGATGTAGAGAAGAAGTGGAATGAAAGGTCAAAGAAACCTCAGAAGCTTACCTCAAGCAACAACACTGAAGAAGATGGCAATGTTGTTCATAGCAAGCAAAGCACAAGCAACTATTGCTCGGAAGACGAATCCAACGCCTCGTTCGAGCTGAATAACTCGAGATCGAATCCGAAAGAGACGACCAAAACCAGGGCTAGTAGAGGCTCAGCTACAGATCCACAAAGCCTCTATGCAAGGAGAAGAAGAGAAAGAATCAATGAGAGGTTGAAAATCTTACAAAATCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTCTACAACTTCAAATCAAGCTATTAAGCTCGGATGATTTATGGATGTACGCTCCAATCGCCTACAACGGAATGGATATCGGGCTTAACCGAACCCCAAACACGTCGAAAGAATTATGA 828 43.12 MEQLRGPIVEDGDQWSCLNGVFTADEEAATFMAQLFNSTAPDPFMAALDLHNNYCNPINSCLGELGNDNNGGFNLEEEDSNLQACYEAELMKLPEEEAAMDQKRHTQLEINCKKRSRGSRDVEKKWNERSKKPQKLTSSNNTEEDGNVVHSKQSTSNYCSEDESNASFELNNSRSNPKETTKTRASRGSATDPQSLYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNRTPNTSKEL 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9163980 9165703 + Carg23036-RA Car11g01142 157095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01142 275 MobiDBLite consensus disorder prediction 99 201 - -
Car11g01142 275 MobiDBLite consensus disorder prediction 133 193 - -
Car11g01142 275 MobiDBLite consensus disorder prediction 99 132 - -
Car11g01142 275 Pfam Helix-loop-helix DNA-binding domain 199 239 IPR011598 GO:0046983
Car11g01142 275 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 189 238 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g01142 Car19g00413 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01142 Car-Chr11:9163980 Car02g00847 Car-Chr2:6107613 4.08E-23 dispersed
Car11g01142 Car-Chr11:9163980 Car12g00539 Car-Chr12:3584220 2.54E-11 wgd
Car11g01142 Car-Chr11:9163980 Car16g00289 Car-Chr16:1789643 6.05E-56 wgd
Car11g01142 Car-Chr11:9163980 Car19g00413 Car-Chr19:5990413 5.88E-71 wgd
Car11g01142 Car-Chr11:9163980 Car04g00421 Car-Chr4:2404628 4.57E-52 wgd
Car11g01142 Car-Chr11:9163980 Car05g00125 Car-Chr5:639016 1.10E-52 wgd
Car11g01142 Car-Chr11:9163980 Car09g00239 Car-Chr9:1316589 4.23E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4315 PF00010 HLH 2.10E-09 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01142 - - mcha:111017406 306.99