Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car11g01142 | ATGGAGCAACTAAGAGGCCCCATTGTTGAAGATGGAGATCAATGGAGCTGTCTCAATGGAGTTTTCACAGCTGATGAAGAAGCTGCAACATTCATGGCTCAACTTTTCAACTCCACAGCTCCTGACCCTTTCATGGCTGCCCTTGATCTTCATAATAATTATTGCAACCCCATAAACTCTTGCTTGGGAGAGCTTGGAAATGATAACAATGGTGGTTTCAATCTTGAAGAGGAGGACTCCAATTTGCAGGCTTGTTATGAAGCTGAGTTGATGAAATTACCTGAAGAAGAAGCTGCCATGGATCAAAAGAGGCATACCCAACTTGAGATCAATTGCAAGAAACGATCGAGGGGATCTCGGGATGTAGAGAAGAAGTGGAATGAAAGGTCAAAGAAACCTCAGAAGCTTACCTCAAGCAACAACACTGAAGAAGATGGCAATGTTGTTCATAGCAAGCAAAGCACAAGCAACTATTGCTCGGAAGACGAATCCAACGCCTCGTTCGAGCTGAATAACTCGAGATCGAATCCGAAAGAGACGACCAAAACCAGGGCTAGTAGAGGCTCAGCTACAGATCCACAAAGCCTCTATGCAAGGAGAAGAAGAGAAAGAATCAATGAGAGGTTGAAAATCTTACAAAATCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTCTACAACTTCAAATCAAGCTATTAAGCTCGGATGATTTATGGATGTACGCTCCAATCGCCTACAACGGAATGGATATCGGGCTTAACCGAACCCCAAACACGTCGAAAGAATTATGA | 828 | 43.12 | MEQLRGPIVEDGDQWSCLNGVFTADEEAATFMAQLFNSTAPDPFMAALDLHNNYCNPINSCLGELGNDNNGGFNLEEEDSNLQACYEAELMKLPEEEAAMDQKRHTQLEINCKKRSRGSRDVEKKWNERSKKPQKLTSSNNTEEDGNVVHSKQSTSNYCSEDESNASFELNNSRSNPKETTKTRASRGSATDPQSLYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNRTPNTSKEL | 275 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 9163980 | 9165703 | + | Carg23036-RA | Car11g01142 | 157095 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car11g01142 | 275 | MobiDBLite | consensus disorder prediction | 99 | 201 | - | - | |
Car11g01142 | 275 | MobiDBLite | consensus disorder prediction | 133 | 193 | - | - | |
Car11g01142 | 275 | MobiDBLite | consensus disorder prediction | 99 | 132 | - | - | |
Car11g01142 | 275 | Pfam | Helix-loop-helix DNA-binding domain | 199 | 239 | IPR011598 | GO:0046983 | |
Car11g01142 | 275 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 189 | 238 | IPR011598 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car11g01142 | Car19g00413 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car11g01142 | Car-Chr11:9163980 | Car02g00847 | Car-Chr2:6107613 | 4.08E-23 | dispersed | |
Car11g01142 | Car-Chr11:9163980 | Car12g00539 | Car-Chr12:3584220 | 2.54E-11 | wgd | |
Car11g01142 | Car-Chr11:9163980 | Car16g00289 | Car-Chr16:1789643 | 6.05E-56 | wgd | |
Car11g01142 | Car-Chr11:9163980 | Car19g00413 | Car-Chr19:5990413 | 5.88E-71 | wgd | |
Car11g01142 | Car-Chr11:9163980 | Car04g00421 | Car-Chr4:2404628 | 4.57E-52 | wgd | |
Car11g01142 | Car-Chr11:9163980 | Car05g00125 | Car-Chr5:639016 | 1.10E-52 | wgd | |
Car11g01142 | Car-Chr11:9163980 | Car09g00239 | Car-Chr9:1316589 | 4.23E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
4315 | PF00010 | HLH | 2.10E-09 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car11g01142 | - | - | mcha:111017406 | 306.99 |