Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01155 ATGGAGGAGATTCAAGCTGTGAAGTCTACTACTGACAATCTAGGCGAAGATTTCTACGAAATGATCGAAGCGCCTAAGTTCGTCGACTTCACCGTTTCCGATCACTTCATTCCTGATGATCGCTACTGGTTCTGCTCCCGAGTCGGTTGTGAAGAGAAGCATCCAGAAGAAATGGACTCTGAAGTTATTTACAAAAACTTTGTTATGCGGGTAATGGCGGCGAGGAGTCCGAATGTTCGGCTTCAGAGAGCTCGAAGGAATCTGAAGTGCCCACTTACAGCTCCTCCCAAGTCTTCAAAATCTAGAGTGGCCAGACTAGCTCTGATATCTTCCATCTCTAATAGGATAGTGGATGCAAGAGTGAAATCTAGACCGCCTATTCCCAAGCCTAGTACGACACTGAATGCAAAGGCAAGACAAGTTCATGCCAAGGCCATGACCACTCCAAGAAACAAGAAGCTTAAATCAAATTCCAATGGGTTTCTGAGTGTTAAAAATCCTAAGACTACATCAGCCGAAGTGCCAAAAACTACAACGGTAGCTAAGGCTTTGATCTTTCAATCTCCAAAGAAAGATACGAAAAAGAAAACTTCAATAGAAATGAGTACCCCTGTGAAAACTTTATGTGCAGCAATGAAGAAACTTGAGATTACTAGTGCGAAGAAGAACCGATTAGGGGATGGACAGCCGTTGCCTCTGGATCCTTCAAGAAGAAAGTTCAGAGGACGTGAGGTAAAGAGCCGAGTTTTTGATTCATTAGGAACTTACAGTTGCAAACGTCGGGATGCCAAATCTGCAAGAGTTTTGAAGAGGAGAAGCAAAGAAAAGAACCTAAAGCCGCCTCTACCTGATCACATGGACCAAGATATTCTTGATGAGGATGCCAGTGACATGGATATTGATGATAAATCAAGGCATGTTTCGATGCAAGGGTCTGCTCTGCCAAGTTCTGCTAAGAATATTGAAGGAAATCAAGATGAACTTCCAAGATCTGAAGATTCGGATAATCTGTCCAAAGACTCTAATGAAACTTCAATTTCAAATTCCGAAAACAATCATGAAGAGATAGCCAAAATAGATACATTAGAGCTGAATATTTCAGAATTTCTTGGGAGTGGTGATAAAGAAATTGCAGCTGAAATTGATGAAGGTATTCAAGATGAAAAGGTTTTGCAAATTGAGGAGCCCCTGGACGAGAACACAGATAATGGATCCAAAAACTTTGAAGATGATGAGACTTTAATATCAAATTCAGAAGCAAGTGATTTCAAGGAGGATGAGAAGAATCAAGAATCCAATCATGAGGAGAGAACAAAATCAGGGGAAATACAGATAAATATCTCAGAACACGAGATTGATGATAAAGAAAATGCAGTGTCCTCTGATGATGATATAGTGCATGAAAGTGAAACCATCACAAATGAAAATACCGCACCTAAACACAACAGGGTAAACAATTCTTGCGACCAGTCTGAAAGAGTGCCATTTGGAAAGCTTGAGAAATCTAAAAATACATCAAAGGTCAATGGAGTATTGAAGAAGAAGACTTTAAAGGAGAACACCACCCCTGCTGCACTTGGTGCTCATGGGCTGAAACCCAGCAAACCAAAGTCCACGAATCCGAAGCCATTCAGGCTAAGAACTGATGAAAGAGTTGTACTAAGGGAAGCAAACTTGGGGAAAAAGCTTAATTGCCCGTTGAAAGACATCACTGCATCTCGAAGGTTTCATGGGGACAAGTTACAGAGAAAAACTCAATCCACGGTTCACCAAAATTCTGGATGCGATGATCATGTTGAATATGAACAAGGGGTGTTACAGAACAAAACCCCAGATGATCAACAAGAAAGAACAGTACCAGATTCCTCAAACAACAACAAAAAAGCAGATTCACAAAATTGCGTTGCTTTAAAACAACACCAGAAACAGAGCCTTTGCCGTCAGCTCAAACCTGCTAAAGAGAGATCAACCAAGCCAGATGAGAATCTGAAAAGAAGCAAACTAGAAAAGATGCAGACAAATGTTAGGAAGCCGCCTCGCGTAGGTAAGTAA 2052 41.18 MEEIQAVKSTTDNLGEDFYEMIEAPKFVDFTVSDHFIPDDRYWFCSRVGCEEKHPEEMDSEVIYKNFVMRVMAARSPNVRLQRARRNLKCPLTAPPKSSKSRVARLALISSISNRIVDARVKSRPPIPKPSTTLNAKARQVHAKAMTTPRNKKLKSNSNGFLSVKNPKTTSAEVPKTTTVAKALIFQSPKKDTKKKTSIEMSTPVKTLCAAMKKLEITSAKKNRLGDGQPLPLDPSRRKFRGREVKSRVFDSLGTYSCKRRDAKSARVLKRRSKEKNLKPPLPDHMDQDILDEDASDMDIDDKSRHVSMQGSALPSSAKNIEGNQDELPRSEDSDNLSKDSNETSISNSENNHEEIAKIDTLELNISEFLGSGDKEIAAEIDEGIQDEKVLQIEEPLDENTDNGSKNFEDDETLISNSEASDFKEDEKNQESNHEERTKSGEIQINISEHEIDDKENAVSSDDDIVHESETITNENTAPKHNRVNNSCDQSERVPFGKLEKSKNTSKVNGVLKKKTLKENTTPAALGAHGLKPSKPKSTNPKPFRLRTDERVVLREANLGKKLNCPLKDITASRRFHGDKLQRKTQSTVHQNSGCDDHVEYEQGVLQNKTPDDQQERTVPDSSNNNKKADSQNCVALKQHQKQSLCRQLKPAKERSTKPDENLKRSKLEKMQTNVRKPPRVGK 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9278281 9281631 + Carg23049-RA Car11g01155 157108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01155 683 MobiDBLite consensus disorder prediction 150 167 - -
Car11g01155 683 MobiDBLite consensus disorder prediction 261 289 - -
Car11g01155 683 MobiDBLite consensus disorder prediction 220 240 - -
Car11g01155 683 MobiDBLite consensus disorder prediction 142 167 - -
Car11g01155 683 MobiDBLite consensus disorder prediction 389 548 - -
Car11g01155 683 MobiDBLite consensus disorder prediction 275 289 - -
Car11g01155 683 MobiDBLite consensus disorder prediction 608 683 - -
Car11g01155 683 MobiDBLite consensus disorder prediction 608 646 - -
Car11g01155 683 MobiDBLite consensus disorder prediction 302 354 - -
Car11g01155 683 MobiDBLite consensus disorder prediction 309 324 - -
Car11g01155 683 MobiDBLite consensus disorder prediction 325 339 - -
Car11g01155 683 MobiDBLite consensus disorder prediction 647 676 - -
Car11g01155 683 MobiDBLite consensus disorder prediction 471 492 - -
Car11g01155 683 MobiDBLite consensus disorder prediction 389 470 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01155 - - - cmax:111485951 1237.63
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g01155 Car19g00390 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01155 Car-Chr11:9278281 Car19g00390 Car-Chr19:5710501 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g820 . . . . . Bpe12g00727 . . Cmo19g00528 Cmo11g01438 . . . . Sed10g1931 Cpe04g00342 Cpe15g00411 Bhi05g00992 Tan02g1082 Cmetu01g1396 . Hepe02g0673 . . Cla02g00723 Cam02g0771 Cec02g0767 Cco02g0798 Clacu02g0765 Cmu02g0758 Cre02g1073 . . . Cone10ag1074 Lsi03g00640 Csa07g00652 . Cme01g00151 . . Bda15g00474 . . . . Bma08g00023 . . . Cma11g01685 Cma19g00515 Car11g01155 Car19g00390 . . . . . . . . . . . . . . . . . . Chy01g00160 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008141 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g01155 Car_Chr11 FPKM 0.0 0.0 0.0 0.0 5.698594 4.928239 5.255356 0.0 0.0 0.0