Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01166 ATGGCGAGAGTTCCGTTCTCGAACCTTAAATCTAAACCTAATACGAAAAAGAGGAAAACTAATGGTGAAATTAACAACCTCCAACAGATGGATGGAGGATTGGGCAACGTAACAACTCAATCACACTCGGATGATGAGTCTTACATCGATCGTCACCATGGATCTTCGAATTCCGAGTACAATCAATATGTGAGTTTAAATATATCTTCGTGTTCAGGGAGGGATTTGGTTGTTCTTAAGAAACGTTTACTCGCGGAGCTTGAACAAGTTAGGAGATTCAAGAATCGCCTTGAATCTGTCGGCATTGGTTTCGGAACTAATTGTTTCAAGAAATCCTCCAAGACTAAGGAGATTAACAAGCGGCCGAAGCCGCTGCCTAGATTCGGTAGAGATTTGCAGGTTTCCAATTTGTTTGAAGTTAAGAATCTGATGAAGGCTTGCTCTCAAATCTTGAACAAGTTGATGAAGCAGAAGTATGGTTCGATCTTCAACAAGCCTGTGGATGTGGTTGGGCTGCGTCTCCATGATTATTATGATATTGTTAAGCGTCCTATGGATTTAGGGACTGTGAAATCTAAACTAGCTAAGAATTTATATAACTCACCGTTGGATTTTGCTGAAGATATTAGGCTAACCTTTAACAATGCCATGTTGTACAATCCAAAAGGTCATGATGTCCATGTCCTGGCTGAGCAGTGGTTGGTGAAATTTGAGGAATTGTTTCGCACTGTTAGTGAGAAGATGGGCGACCTGGTGCAGCCAGACCTGTATGAGGAGGAATTGCAAGCCAGTTCTTGGAATCATGTAGAAGAGGCGAAGGTGGAAGCGCCATTGAGCTCATCGAAACCGCCTTCAATACAGTCGCCAGTGAAAACCCCATCACCAGTGCGGGCTCCTCAAGTGAAGCCTGTAAGGCAGCCAAAGCCAAAGGATCCGAACAAAAGGGAGATGAGTTTGGAGGAGAAACACAAATTGGGAGTTGGGTTGCAGGGCTTGCCTCCTGAGAAAATGGACCAAGTGATACAGATTGTGAAGAAGAGGAGTGGAAATTTGACACAGGATGGGGACGAGATTGAGCTTGACATCGAGGCAGTCGATACCGAGACCCTTTGGGAACTCGACCGGCTGGTGACAGATTGGAAGAAAATGATGAGCAAAGTCAAGCAGCAATCCCTCATCAGTGACAATGCAAACGCCGATTCCATTAAAGCGAATAATGAGATATCATCTGCAAATGAATTGAATGAGTCTAAAACAGAGGCAAAGCAGCTTAGAAAAGGGGATATGGGTGAGGAAGATGTGGACATTGGGGATGAGGAGATGATGCCAGTGGGTGGTTTCCCTCCTGTTGAAATTGAAAACGATGCAGCTGCTCATGCTAGTAGTAGTAGGTCTGATAGCTCAAGTAGTTCAGACAGTGATGATTCTTCCTCCTCAAGTGGTTCTGATTCAGAAGGTAGTTCCTCTGATAGCGAATCCGACCGTGACGGTGACGGTCAATCATAG 1506 44.56 MARVPFSNLKSKPNTKKRKTNGEINNLQQMDGGLGNVTTQSHSDDESYIDRHHGSSNSEYNQYVSLNISSCSGRDLVVLKKRLLAELEQVRRFKNRLESVGIGFGTNCFKKSSKTKEINKRPKPLPRFGRDLQVSNLFEVKNLMKACSQILNKLMKQKYGSIFNKPVDVVGLRLHDYYDIVKRPMDLGTVKSKLAKNLYNSPLDFAEDIRLTFNNAMLYNPKGHDVHVLAEQWLVKFEELFRTVSEKMGDLVQPDLYEEELQASSWNHVEEAKVEAPLSSSKPPSIQSPVKTPSPVRAPQVKPVRQPKPKDPNKREMSLEEKHKLGVGLQGLPPEKMDQVIQIVKKRSGNLTQDGDEIELDIEAVDTETLWELDRLVTDWKKMMSKVKQQSLISDNANADSIKANNEISSANELNESKTEAKQLRKGDMGEEDVDIGDEEMMPVGGFPPVEIENDAAAHASSSRSDSSSSSDSDDSSSSSGSDSEGSSSDSESDRDGDGQS 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9355556 9358041 + Carg23060-RA Car11g01166 157119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01166 501 MobiDBLite consensus disorder prediction 280 294 - -
Car11g01166 501 ProSiteProfiles Bromodomain profile. 155 227 IPR001487 GO:0005515
Car11g01166 501 Pfam Bromodomain extra-terminal - transcription regulation 316 378 IPR027353 -
Car11g01166 501 ProSiteProfiles NET domain profile. 307 388 IPR027353 -
Car11g01166 501 Pfam Bromodomain 147 231 IPR001487 GO:0005515
Car11g01166 501 MobiDBLite consensus disorder prediction 20 43 - -
Car11g01166 501 MobiDBLite consensus disorder prediction 1 54 - -
Car11g01166 501 MobiDBLite consensus disorder prediction 405 501 - -
Car11g01166 501 MobiDBLite consensus disorder prediction 272 319 - -
Car11g01166 501 MobiDBLite consensus disorder prediction 458 487 - -
Car11g01166 501 MobiDBLite consensus disorder prediction 418 432 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01166 - - - cmos:111434590 890.567
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01166 Car-Chr11:9355556 Car11g01609 Car-Chr11:12783395 2.15E-72 dispersed
Car11g01166 Car-Chr11:9355556 Car16g00258 Car-Chr16:1624390 3.87E-180 wgd
Car11g01166 Car-Chr11:9355556 Car19g00371 Car-Chr19:5555947 0 wgd
Car11g01166 Car-Chr11:9355556 Car04g00390 Car-Chr4:2212028 2.01E-170 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g868 . . . . . . Bma05g00620 . . Cmo11g01450 . . . . Sed08g2798 Cpe04g00359 . Bhi05g00968 Tan02g1117 Cmetu01g2617 Lac12g0105 Hepe02g0695 . . Cla10g00935 Cam10g0956 Cec10g0994 Cco10g0953 Clacu10g0981 Cmu10g1766 Cre10g1139 . Cone9ag1431 . . . Csa07g00643 . Cme01g00160 . Blo13g00200 Bda15g00483 . . Bpe05g00445 . Bma08g00032 . . . Cma11g01678 . Car11g01166 . . . . . . . . . . Cla09g01617 Cam09g1535 Cec09g1779 Cco09g1862 . . Cre01g0782 . . Chy01g00168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001096 3 2 3 3 1 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 8 5 1 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g01166 Car_Chr11 FPKM 58.990089 60.714321 62.005093 60.985382 84.888512 96.884277 91.995705 50.942871 60.474045 55.783375