Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01171 ATGCCGGACTCCAATTTCCAAGACGTGATGTACGGTTCCGGAGTCATGAACAACGTTGCCCAGGATTTGGATAACGTTCAGACTCAAGTTGGCGATGAAGACGACAACGTTACCGGTCGGGAAGAGTCCATTGACAACCCTCAGATGCGCTTTGAAGACTCCGGAGGGATGAGCGGCTCGGTCTCAGCGATGAATCGAGTCCAGGATATTGTTCCCTCGGCGTATATTTCCAGCTCTGATTACAACCCTTTGATTGGAAACGGTGGTGCCGATCAGCTCACGCTGTCATTCAGAGGGGAGGTTTACGCTTTTGACTCTGTATCGCCGGACAAGGTGCAAGCCGTACTTTTGCTTTTAGGTGGATATGAAGTTCCATCTGGTATTCCTGCTGTTGGAAGTATTCCTGTCAATCAACAGGGTGCTGATGGCTTTCCTGTCAGGTCGGCGCAACCGCAAAGAGCTGCTTCATTGAGTAGGTTTCGAGAGAAGAGGAAAGAAAGGTGTTTCGGGAAGAAAATCCGTTACAATGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCATCTAAAGCTAGTGCAGATGAAGTGGGCTCATCTTCAGTATTGGCTCTAACTTTGGATTCTGGTCAAGATGATGGCTTGTTGGAAACTTCATGCACACATTGTGGAGTCAGTTCAAAATCTACCCCAATGATGCGTCGAGGGCCAGCAGGCCCGAGGACTCTGTGCAATGCATGTGGGCTGAAGTGGGCCAATAAGGGAATTTTGAGGGATCTTTCCAAGGTTTCAACCGCTGGCATTCAGGAGCCCTCTGTGAAGGAGACTGAACAGAGCGACGGTGAAGCCAACGAGTCCGATGCTGCTATAAACGTGGATGCCCTCGCTTCTAATGGTGGTAAATAG 921 49.4 MPDSNFQDVMYGSGVMNNVAQDLDNVQTQVGDEDDNVTGREESIDNPQMRFEDSGGMSGSVSAMNRVQDIVPSAYISSSDYNPLIGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEVPSGIPAVGSIPVNQQGADGFPVRSAQPQRAASLSRFREKRKERCFGKKIRYNVRKEVALRMQRKKGQFISSKASADEVGSSSVLALTLDSGQDDGLLETSCTHCGVSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSTAGIQEPSVKETEQSDGEANESDAAINVDALASNGGK 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9390946 9395662 - Carg23065-RA Car11g01171 157124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01171 306 SMART tify_2 86 121 IPR010399 -
Car11g01171 306 SMART GATA_3 219 273 IPR000679 GO:0006355|GO:0043565
Car11g01171 306 Pfam tify domain 90 120 IPR010399 -
Car11g01171 306 PANTHER GATA TRANSCRIPTION FACTOR 18 1 297 - -
Car11g01171 306 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Car11g01171 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 270 - -
Car11g01171 306 MobiDBLite consensus disorder prediction 30 58 - -
Car11g01171 306 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355|GO:0043565
Car11g01171 306 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355|GO:0043565
Car11g01171 306 Gene3D - 221 280 IPR013088 GO:0006355|GO:0008270
Car11g01171 306 CDD ZnF_GATA 224 274 IPR000679 GO:0006355|GO:0043565
Car11g01171 306 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355|GO:0043565
Car11g01171 306 PANTHER GATA TRANSCRIPTION FACTOR 28 1 297 IPR045280 GO:0006355
Car11g01171 306 MobiDBLite consensus disorder prediction 34 48 - -
Car11g01171 306 Pfam CCT motif 153 195 IPR010402 GO:0005515
Car11g01171 306 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515
Car11g01171 306 MobiDBLite consensus disorder prediction 271 306 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01171 - - - csv:101222542 523.857
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00483 Car-Chr5:2782368 Car11g01171 Car-Chr11:9390946 7.95E-64 dispersed
Car08g00734 Car-Chr8:4721919 Car11g01171 Car-Chr11:9390946 3.04E-64 dispersed
Car11g01171 Car-Chr11:9390946 Car17g00597 Car-Chr17:5676352 2.88E-64 dispersed
Car11g01171 Car-Chr11:9390946 Car19g00359 Car-Chr19:5475519 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car17g00597 CST 1 230 Tify Gene Family AT3G21175 56.1 3.7e-59 225.3
Car08g00734 CST 2 230 Tify Gene Family AT3G21175 55.5 3.8e-56 215.3
Car05g00483 . 48 302 Tify Gene Family AT4G24470 50.4 1.5e-61 233.8
Car11g01171 . 89 302 Tify Gene Family AT4G24470 52.1 3.8e-49 192.6
Car19g00359 . 82 260 Tify Gene Family AT4G24470 59.2 2.1e-47 186.8
Car17g00597 CST 1 265 Tify Gene Family AT1G51600 59.3 8.9e-80 294.3
Car08g00734 CST 2 265 Tify Gene Family AT1G51600 59.6 9.9e-79 290.8
Car19g00359 . 79 280 Tify Gene Family AT1G51600 57.3 1.1e-53 207.6
Car11g01171 . 86 287 Tify Gene Family AT1G51600 57.1 5.5e-53 205.3
Car05g00483 . 348 523 Tify Gene Family AT1G51600 59.6 1.1e-50 197.6
Car12g00188 . 412 585 Tify Gene Family AT1G51600 55.8 1.7e-46 183.7
Car05g00483 . 48 302 Tify Gene Family AT4G24470 50.4 1.5e-61 233.8
Car11g01171 . 89 302 Tify Gene Family AT4G24470 52.1 3.8e-49 192.6
Car19g00359 . 82 260 Tify Gene Family AT4G24470 59.2 2.1e-47 186.8
Car17g00597 CST 1 265 Tify Gene Family AT1G51600 59.3 8.9e-80 294.3
Car08g00734 CST 2 265 Tify Gene Family AT1G51600 59.6 9.9e-79 290.8
Car19g00359 . 79 280 Tify Gene Family AT1G51600 57.3 1.1e-53 207.6
Car11g01171 . 86 287 Tify Gene Family AT1G51600 57.1 5.5e-53 205.3
Car05g00483 . 348 523 Tify Gene Family AT1G51600 59.6 1.1e-50 197.6
Car12g00188 . 412 585 Tify Gene Family AT1G51600 55.8 1.7e-46 183.7
Car17g00597 CST 1 230 Tify Gene Family AT3G21175 56.1 3.7e-59 225.3
Car08g00734 CST 2 230 Tify Gene Family AT3G21175 55.5 3.8e-56 215.3
Car17g00183 CST 1 180 Tify Gene Family AT4G14713 52.1 4.0e-45 178.7
Car08g01006 CST 1 180 Tify Gene Family AT4G14713 52.1 2.6e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4319 PF06203 CCT 1.60E-15 CL0281 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g01171 Car_Chr11 FPKM 0.0 0.0 0.0 0.368487 0.0 0.0 0.0 0.0 0.0 0.0