Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01171 ATGCCGGACTCCAATTTCCAAGACGTGATGTACGGTTCCGGAGTCATGAACAACGTTGCCCAGGATTTGGATAACGTTCAGACTCAAGTTGGCGATGAAGACGACAACGTTACCGGTCGGGAAGAGTCCATTGACAACCCTCAGATGCGCTTTGAAGACTCCGGAGGGATGAGCGGCTCGGTCTCAGCGATGAATCGAGTCCAGGATATTGTTCCCTCGGCGTATATTTCCAGCTCTGATTACAACCCTTTGATTGGAAACGGTGGTGCCGATCAGCTCACGCTGTCATTCAGAGGGGAGGTTTACGCTTTTGACTCTGTATCGCCGGACAAGGTGCAAGCCGTACTTTTGCTTTTAGGTGGATATGAAGTTCCATCTGGTATTCCTGCTGTTGGAAGTATTCCTGTCAATCAACAGGGTGCTGATGGCTTTCCTGTCAGGTCGGCGCAACCGCAAAGAGCTGCTTCATTGAGTAGGTTTCGAGAGAAGAGGAAAGAAAGGTGTTTCGGGAAGAAAATCCGTTACAATGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCATCTAAAGCTAGTGCAGATGAAGTGGGCTCATCTTCAGTATTGGCTCTAACTTTGGATTCTGGTCAAGATGATGGCTTGTTGGAAACTTCATGCACACATTGTGGAGTCAGTTCAAAATCTACCCCAATGATGCGTCGAGGGCCAGCAGGCCCGAGGACTCTGTGCAATGCATGTGGGCTGAAGTGGGCCAATAAGGGAATTTTGAGGGATCTTTCCAAGGTTTCAACCGCTGGCATTCAGGAGCCCTCTGTGAAGGAGACTGAACAGAGCGACGGTGAAGCCAACGAGTCCGATGCTGCTATAAACGTGGATGCCCTCGCTTCTAATGGTGGTAAATAG 921 49.4 MPDSNFQDVMYGSGVMNNVAQDLDNVQTQVGDEDDNVTGREESIDNPQMRFEDSGGMSGSVSAMNRVQDIVPSAYISSSDYNPLIGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEVPSGIPAVGSIPVNQQGADGFPVRSAQPQRAASLSRFREKRKERCFGKKIRYNVRKEVALRMQRKKGQFISSKASADEVGSSSVLALTLDSGQDDGLLETSCTHCGVSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSTAGIQEPSVKETEQSDGEANESDAAINVDALASNGGK 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9390946 9395662 - Carg23065-RA Car11g01171 157124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01171 306 SMART tify_2 86 121 IPR010399 -
Car11g01171 306 SMART GATA_3 219 273 IPR000679 GO:0006355|GO:0043565
Car11g01171 306 Pfam tify domain 90 120 IPR010399 -
Car11g01171 306 PANTHER GATA TRANSCRIPTION FACTOR 18 1 297 - -
Car11g01171 306 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Car11g01171 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 270 - -
Car11g01171 306 MobiDBLite consensus disorder prediction 30 58 - -
Car11g01171 306 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355|GO:0043565
Car11g01171 306 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355|GO:0043565
Car11g01171 306 Gene3D - 221 280 IPR013088 GO:0006355|GO:0008270
Car11g01171 306 CDD ZnF_GATA 224 274 IPR000679 GO:0006355|GO:0043565
Car11g01171 306 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355|GO:0043565
Car11g01171 306 PANTHER GATA TRANSCRIPTION FACTOR 28 1 297 IPR045280 GO:0006355
Car11g01171 306 MobiDBLite consensus disorder prediction 34 48 - -
Car11g01171 306 Pfam CCT motif 153 195 IPR010402 GO:0005515
Car11g01171 306 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515
Car11g01171 306 MobiDBLite consensus disorder prediction 271 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00483 Car-Chr5:2782368 Car11g01171 Car-Chr11:9390946 7.95E-64 dispersed
Car08g00734 Car-Chr8:4721919 Car11g01171 Car-Chr11:9390946 3.04E-64 dispersed
Car11g01171 Car-Chr11:9390946 Car17g00597 Car-Chr17:5676352 2.88E-64 dispersed
Car11g01171 Car-Chr11:9390946 Car19g00359 Car-Chr19:5475519 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4319 PF06203 CCT 1.60E-15 CL0281 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01171 - - csv:101222542 523.857