Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01186 ATGGCGGACCGTGGATCTTACGGCCTGGCTCCTCGTCTAGACATCGATCAGTTATTGATAGAAGCAAGACATCGTTGGCTGCGTCCAGCTGAAATTTGTGAAATACTTCGTAACTATCCGAAGTTTCATATTGCTTCAGAGCCTCCAGAGAGACCATCAAGTGGGTCACTTTTTCTTTTTGATCGAAAGGTTCTGAGGTACTTCCGAAAGGATGGACACAAATGGAGGAAGAAGAAAGATGGCAAAACCGTAAAGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTACTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTAAAGGGTAATAGAACCAATATTGGAGCTGTTGTTGAGACAGATGAGGTTTCATCAAGCTCACAGAAGAGCAGTCCTATGAGTTCTAGCTATTCCAGCAGTCGTAATCAAGCAGCTTTTGAAAATGCAGATTCCCCCAGCCCAACCAGCACTGTGACATCATCATATGAAGATGCTGATACTGAAGACACTTACCAAGAAACTTCAAGATTTCACTCATTTCCAACATCACCACTAATGAACAATGGTCTTCTGGTGAATAAAAAAGAAGCTGGTCCATCAAATATTTACTATCCACATTCCTCTTCCAATAATATTGAAGCTTGGCCATCGGCTCCTGCCGTGGAATATGTACCCCAAGTTCAGAAAGATGGACTTGGGAGTAGTGATGGTGGTACAGGTGTGATTGGTTCTCAGAAGACACTCACCTCTGCCTCGTGGGAAGAGATCTTTCAACAATGCACAACTGGATTTCAAACAGTACCTTCTCAGGTTTTAAACTCTTGGATTGAACCTTTATCTTCTGGAACTGTCCTTGGACAGGAGAATTCAATTCCTGGCAAGCTTTTAGCCGGTAATAATGCTATTAAAGAGGACTTTAAGAGCTCACTGACAATGGCATCGAACTGTCAGGTTCCTTTTGAAGACAATACTTCATCCTTTTCAAAAGGGCACGTTGACCAGTTTCCAGATTTATATTCAGTTTATGATATCAATGGCAAGTTAACTGAGCAGAAATCTCATAACGCAACTTTTGGAAGCGGTCATGCTCATCCTAGCATAGAGAATAAGGAGCTTTTTTCAAAAAACTTCGAACCACAGTTCAATGAAGGAGAATTGTATTCTGCAACTAGGTTGAATTCTGAAAATGATATATCTAAAGAAGGTTCCATCAGCTATTCTTTGGCTTTGAAACAATCATTAGTAGATGGAGAGGAGAGTTTGAAGAAAGTCGACAGTTTCTCACGGTGGGTATCTAGAGAGCTTGTGGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGTCTTGGAGCACTGTAGAATGTGGTGATATGGTGGATGATTCGTCATTAAGCCCTTCTCTTTCTGAAGACCAGCTTTTCAGTATAACAGACTTTTCTCCGAAGTCGACACTTCTAGATTTAGAAACCGAGGTTGTGATTATAGGAAAGTTTCTGGGGAACAATCATGCCACAAAATGTTACTGGTCATGTATGTTTGGGGAAGTTGAGGTTCCTGCAGAGGTTTTGGCTGATGGGATTCTGTGCTGTCACGCACCACCACATAGTGTTGGGCAAGTCCCTTTTTATGTTACATGTTCCAACAGATTAGCTTGCAGCGAGGTGCGTGAATTTGATTACCTGGCAGACTCTGCTCAAGATGTAGATGTTACCAATGTATATACCGCTGGTGCTACAGAAGAATTACATATGCATTTGCGGTTTGAGAGGCTACTATCCACTAGATCTTCAGATCCTCCAAATAATCTCTCAGAAGGTGCCTTGGAGAAACGGAACTTAATCAAAAAGCTCATCTCAATAAAAGAAGAAGAAGATTGTTATGGGGAAGAGCCAAATTCTCAGAATGATCAAAATCAGCATCAAAGCAAGGAATCTCTTTTTGTAAAGCTGATGAAAGAAAAGCTGTACTCATGGCTTATACGTAAAGTAATTGAAGATGGAAAAGGTCCTAATATATTGGATGATAAGGGACAGGGATTAATTCATTTAGCTGCAGCTCTTGGCTATGATTGGGCAATCAGACCAATTGTAGCTACTGGAGTGAGTCTGAATTTCAGAGACGTTAATGGATGGACTGCTGTTCATTGGGCAGCATTCTATGGCAGGGAGTTGACAGTTGGAACTCTTATAACTTTGGGCGCCGATCCTGGATTGCCGTCAGATCCATCTCCAGGCAATCCTTCGGGCACAACGCCTGCAGACCTTGCTTCTGTAAGGGGACAGAAGGGGATCGCTGGTTTTCTAGCGGAGTCGTCATTGACCAGCTACATCTCATCTGTATCAATGGCAGATACCAAAAAAGATGGTGTGCTAGACGCTTCAGAAGGGAAAGCTGTGTATACCGCTGCTGAACGAAAGGCAACACCAATAAATGATGGTTTTATGCCTGGTGATTTGTCCTTGAAGGATTCGTTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGATCGTATACATCTGATGTTTCGAGTAAAGTCATTTCAGAGAAAGCAATTATCAGAGCGTGGAGCTGATGAATTTGGATACTCAGATGATAGTGCTATTTCGGTTGTCGCTGCCAGGGCACGCAAGTCTCGACTGAGTAACAGCCCAGACCATGCTGCTGCAGTTCACATACAGAAAAAGTTCCGTGGTTGGAAAATGAGAAAAGAATTCTTGCTTATACGTCAAAGAATAGTGAAAATTCAGGCCATTGTGAGAGGACACCAGGTGAGGAAGCAATACAAAAAGATCGTCTGGTCGGTAGGAATATTAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGCTTCCGATCAGATACAGTTGCCAAGACTCCGCCCTCTGTGGTGATGGAACCACGTGAAGAGGACGACGAAGATTTTTTGAAGAAAGGAAGAAGACAGACTGAGGAAAGATTTCAAAAAGCACTTACTAGAGTCAAGTCCATGGCTCAGTATCCTGAGGGACGGGACCAATACCGTAGGCTACTTACCGTGGTTCAAAAGTGCCGAGAAACCAAGGTGAGTAATATAAGTATTACTAGTACTTCAGAAGAGATAATAGAAGGTGATGACATGATTGATATCGACTCACTGCTGGATGATGATGCTTTGATGTCTATGACATTTGATTGA 3276 42.55 MADRGSYGLAPRLDIDQLLIEARHRWLRPAEICEILRNYPKFHIASEPPERPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNIGAVVETDEVSSSSQKSSPMSSSYSSSRNQAAFENADSPSPTSTVTSSYEDADTEDTYQETSRFHSFPTSPLMNNGLLVNKKEAGPSNIYYPHSSSNNIEAWPSAPAVEYVPQVQKDGLGSSDGGTGVIGSQKTLTSASWEEIFQQCTTGFQTVPSQVLNSWIEPLSSGTVLGQENSIPGKLLAGNNAIKEDFKSSLTMASNCQVPFEDNTSSFSKGHVDQFPDLYSVYDINGKLTEQKSHNATFGSGHAHPSIENKELFSKNFEPQFNEGELYSATRLNSENDISKEGSISYSLALKQSLVDGEESLKKVDSFSRWVSRELVEVDDLHMHPSSGLSWSTVECGDMVDDSSLSPSLSEDQLFSITDFSPKSTLLDLETEVVIIGKFLGNNHATKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGQVPFYVTCSNRLACSEVREFDYLADSAQDVDVTNVYTAGATEELHMHLRFERLLSTRSSDPPNNLSEGALEKRNLIKKLISIKEEEDCYGEEPNSQNDQNQHQSKESLFVKLMKEKLYSWLIRKVIEDGKGPNILDDKGQGLIHLAAALGYDWAIRPIVATGVSLNFRDVNGWTAVHWAAFYGRELTVGTLITLGADPGLPSDPSPGNPSGTTPADLASVRGQKGIAGFLAESSLTSYISSVSMADTKKDGVLDASEGKAVYTAAERKATPINDGFMPGDLSLKDSLTAVCNATQAADRIHLMFRVKSFQRKQLSERGADEFGYSDDSAISVVAARARKSRLSNSPDHAAAVHIQKKFRGWKMRKEFLLIRQRIVKIQAIVRGHQVRKQYKKIVWSVGILDKIILRWRRKGSGLRGFRSDTVAKTPPSVVMEPREEDDEDFLKKGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKVSNISITSTSEEIIEGDDMIDIDSLLDDDALMSMTFD 1091
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9603351 9617848 - Carg26457-RA Car11g01186 157139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01186 1091 ProSiteProfiles IQ motif profile. 914 943 IPR000048 GO:0005515
Car11g01186 1091 SUPERFAMILY E set domains 505 589 IPR014756 -
Car11g01186 1091 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1091 - -
Car11g01186 1091 Gene3D - 914 961 - -
Car11g01186 1091 ProSiteProfiles Ankyrin repeat region circular profile. 738 764 - -
Car11g01186 1091 SMART CG_1_2 18 136 IPR005559 GO:0003677
Car11g01186 1091 Pfam IQ calmodulin-binding motif 915 934 IPR000048 GO:0005515
Car11g01186 1091 Pfam IQ calmodulin-binding motif 939 958 IPR000048 GO:0005515
Car11g01186 1091 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Car11g01186 1091 Gene3D Immunoglobulins 498 594 IPR013783 -
Car11g01186 1091 ProSiteProfiles IQ motif profile. 937 961 IPR000048 GO:0005515
Car11g01186 1091 CDD IPT 504 590 - -
Car11g01186 1091 SMART iq_5 913 935 IPR000048 GO:0005515
Car11g01186 1091 SMART iq_5 936 958 IPR000048 GO:0005515
Car11g01186 1091 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1091 - -
Car11g01186 1091 SUPERFAMILY Ankyrin repeat 684 799 IPR036770 -
Car11g01186 1091 Pfam IPT/TIG domain 504 582 IPR002909 -
Car11g01186 1091 MobiDBLite consensus disorder prediction 147 193 - -
Car11g01186 1091 ProSiteProfiles Ankyrin repeat profile. 738 770 IPR002110 GO:0005515
Car11g01186 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 903 964 IPR027417 -
Car11g01186 1091 MobiDBLite consensus disorder prediction 147 208 - -
Car11g01186 1091 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Car11g01186 1091 Gene3D - 664 836 IPR036770 -
Car11g01186 1091 MobiDBLite consensus disorder prediction 764 784 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01186 K21596 CAMTA; calmodulin-binding transcription activator - csv:101203707 1702.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00162 Car-Chr8:983394 Car11g01186 Car-Chr11:9603351 6.63E-46 dispersed
Car11g01186 Car-Chr11:9603351 Car16g00743 Car-Chr16:4680164 9.54E-69 dispersed
Car11g01186 Car-Chr11:9603351 Car19g00205 Car-Chr19:1981956 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car11g01186 . 1 1091 CAMTA Transcription Factor Family AT5G64220 53.1 5.5e-270 927.9
Car19g00205 . 28 1103 CAMTA Transcription Factor Family AT5G64220 52.5 2.0e-264 909.4
Car08g00162 . 5 929 CAMTA Transcription Factor Family AT1G67310 51.8 2.8e-250 862.4
Car17g01328 . 6 950 CAMTA Transcription Factor Family AT1G67310 50.3 2.4e-246 849.4
Car08g01136 CST 34 906 CAMTA Transcription Factor Family AT3G16940 55.1 2.2e-258 889.0
Car17g00331 CCT,CST 91 957 CAMTA Transcription Factor Family AT3G16940 53.8 9.7e-254 873.6
Car17g00331 CCT,CST 68 681 CAMTA Transcription Factor Family AT4G16150 52.4 4.5e-191 665.6
Car08g01136 CST 11 630 CAMTA Transcription Factor Family AT4G16150 52.1 3.2e-189 659.4
Car11g01186 . 1 1091 CAMTA Transcription Factor Family AT5G64220 53.1 5.5e-270 927.9
Car19g00205 . 28 1103 CAMTA Transcription Factor Family AT5G64220 52.5 2.0e-264 909.4
Car08g00162 . 5 929 CAMTA Transcription Factor Family AT1G67310 51.8 2.8e-250 862.4
Car17g01328 . 6 950 CAMTA Transcription Factor Family AT1G67310 50.3 2.4e-246 849.4
Car17g00331 CCT,CST 68 681 CAMTA Transcription Factor Family AT4G16150 52.4 4.5e-191 665.6
Car08g01136 CST 11 630 CAMTA Transcription Factor Family AT4G16150 52.1 3.2e-189 659.4
Car08g01136 CST 34 906 CAMTA Transcription Factor Family AT3G16940 55.1 2.2e-258 889.0
Car17g00331 CCT,CST 91 957 CAMTA Transcription Factor Family AT3G16940 53.8 9.7e-254 873.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4320 PF03859 CG-1 4.80E-50 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g01186 Car_Chr11 FPKM 0.0 0.9702 0.0 0.0 0.23021 0.0 0.0 19.173803 24.965256 25.939192