Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car11g01209 | ATGGCCGATGGTGAAGATATCCAACCTCTTGTCTGTGATAATGGAACTGGAATGGTCAAGGCTGGATTTGCCGGTGACGATGCTCCAAGGGCTGTGTTTCCTAGTATTGTCGGTCGACCACGTCATACCGGTGTGATGGTTGGAATGGGCCAAAAGGATGCATATGTTGGGGATGAAGCTCAGTCAAAAAGGGGTATTCTTACATTGAAATACCCAATTGAGCATGGCATTGTAAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACATTCTACAACGAGCTTCGTGTTGCTCCTGAAGAACATCCGGTCCTTCTTACTGAAGCACCGCTCAACCCGAAGGCAAACAGGGAGAAGATGACTCAGATAATGTTTGAAACGTTCGACGTCCCCGCTATGTATGTTGCAATCCAGGCCGTTTTATCTCTCTATGCCAGTGGTCGGACAACAGGTATTGTGTTGGATTCTGGAGATGGAGTGAGCCACACAGTGCCAATATATGAGGGGTTTTCGCTCCCTCATGCAATCCTACGTCTCGACCTTGCTGGTCGTGATCTAACTGATGCTTTAATGAAAATTCTCACCGAAAGAGGTTACATGTTCACGACAACCGCCGAGCGGGAAATTGTCCGTGATGTGAAGGAGAAGCTTGCATATGTGGCCCTTGATTATGAGCAAGAACTGGAGACAGCCAAGACTAGTTCGGCCATTGAGAAAAGCTACGAACTACCAGACGGGCAGGTAATTACAATCGGAGCTGAGAGATTCCGTTGCCCTGAAGTACTTTTCCAGCCATCTCTGATCGGCATGGAATCTCCTGGAATCCATGAAACCACGTATAACTCCATCATGAAGTGTGATGTCGATATCAGGAAAGACTTATACGGTAACATCGTCCTCAGTGGTGGGTCAACAATGTTCCCCGGCATTGCTGATCGTATGAGCAAAGAAATTACCGCTCTTGCTCCGAGCAGCATGAAGATTAAGGTCGTTGCTCCTCCAGAAAGGAAGTACAGTGTTTGGATTGGAGGATCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATAACAAAGGCCGAATACGACGAGTCGGGTCCTGCTATCGTTCACAGGAAATGCTTCTGA | 1134 | 47.62 | MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETAKTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF | 377 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 9827252 | 9830327 | - | Carg23994-RA | Car11g01209 | 157162 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car11g01209 | 377 | Gene3D | - | 140 | 340 | - | - | |
Car11g01209 | 377 | PANTHER | ACTIN-2-LIKE | 1 | 376 | - | - | |
Car11g01209 | 377 | PANTHER | ACTIN | 1 | 376 | IPR004000 | - | |
Car11g01209 | 377 | SUPERFAMILY | Actin-like ATPase domain | 149 | 377 | IPR043129 | - | |
Car11g01209 | 377 | SUPERFAMILY | Actin-like ATPase domain | 6 | 155 | IPR043129 | - | |
Car11g01209 | 377 | Pfam | Actin | 5 | 377 | IPR004000 | - | |
Car11g01209 | 377 | ProSitePatterns | Actins and actin-related proteins signature. | 106 | 118 | IPR020902 | - | |
Car11g01209 | 377 | Gene3D | - | 10 | 371 | - | - | |
Car11g01209 | 377 | Gene3D | Actin; Chain A, domain 4 | 182 | 273 | - | - | |
Car11g01209 | 377 | ProSitePatterns | Actins signature 1. | 55 | 65 | IPR004001 | - | |
Car11g01209 | 377 | ProSitePatterns | Actins signature 2. | 358 | 366 | IPR004001 | - | |
Car11g01209 | 377 | CDD | NBD_sugar-kinase_HSP70_actin | 10 | 183 | - | - | |
Car11g01209 | 377 | PRINTS | Actin signature | 28 | 37 | IPR004000 | - | |
Car11g01209 | 377 | PRINTS | Actin signature | 51 | 62 | IPR004000 | - | |
Car11g01209 | 377 | PRINTS | Actin signature | 63 | 85 | IPR004000 | - | |
Car11g01209 | 377 | PRINTS | Actin signature | 117 | 130 | IPR004000 | - | |
Car11g01209 | 377 | PRINTS | Actin signature | 142 | 161 | IPR004000 | - | |
Car11g01209 | 377 | PRINTS | Actin signature | 238 | 254 | IPR004000 | - | |
Car11g01209 | 377 | SMART | actin_3 | 7 | 377 | IPR004000 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car10g00229 | Car-Chr10:1086705 | Car11g01209 | Car-Chr11:9827252 | 6.16E-84 | dispersed | |
Car11g01209 | Car-Chr11:9827252 | Car20g00933 | Car-Chr20:10188237 | 0 | dispersed | |
Car11g01209 | Car-Chr11:9827252 | Car19g00231 | Car-Chr19:2313086 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car11g01209 | K10355 | - | csv:101214459 | 753.051 |