Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01211 ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCCCAGCAGGCTGCAGGCGGTGTTGGTGCAGGACAATTACCATATTCTAATCCTTACCAAACAGCTCCAATGGGGGCGTCCGGAACGCCTGCTATTACGATTCCCCCGACTCAGCAACCATCCAGTTTCTCCAACTCTCCACACCAGCTTGCCTTTCAGCAGGCTCAGCACTTCCACCAGCAGCAGCAGCAACAACAGCAACAACAGCTCCAAGTGTTCTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTCCCCCTTGCTCGAATCAAGAAAATAATGAAAGCGGATGAAGACGTTCGAATGATTTCAGCTGAAGCGCCAGTTATATTTGCAAAGGCGTGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAACGATATTGCAGCTGCAATTTCGAGGACCGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGTCTCGGAATCACGAAAGCTTCTATTCCTGTAGTTGGTTCCCCGGCCGATCTTCCTTATTACTATGTTCCATCACAACATCCAGTGAGTGCTACAGGGATGATCATGGGGAAGCAATTAGATCAAGCGAACATGTACGGTGCCACAGCTCAACAGCCCCGACCACCGATACCTTTCATGCCATGGCCGCATACTCAAGCTCAGCAGCAGCAGCAACAACAACAAACTCAGCAGCAAAGTGACGCATAG 810 47.53 MDQSERSQHQQQSQQAAGGVGAGQLPYSNPYQTAPMGASGTPAITIPPTQQPSSFSNSPHQLAFQQAQHFHQQQQQQQQQQLQVFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADLPYYYVPSQHPVSATGMIMGKQLDQANMYGATAQQPRPPIPFMPWPHTQAQQQQQQQQTQQQSDA 269
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 9853090 9853899 - Carg23996-RA Car11g01211 157164
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car11g01211 269 SUPERFAMILY Histone-fold 67 175 IPR009072 GO:0046982
Car11g01211 269 MobiDBLite consensus disorder prediction 1 19 - -
Car11g01211 269 Pfam Core histone H2A/H2B/H3/H4 51 166 IPR007125 GO:0003677
Car11g01211 269 MobiDBLite consensus disorder prediction 26 75 - -
Car11g01211 269 MobiDBLite consensus disorder prediction 250 269 - -
Car11g01211 269 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 258 - -
Car11g01211 269 MobiDBLite consensus disorder prediction 1 75 - -
Car11g01211 269 MobiDBLite consensus disorder prediction 236 269 - -
Car11g01211 269 Gene3D Histone, subunit A 64 181 IPR009072 GO:0046982
Car11g01211 269 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 9 258 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01211 Car-Chr11:9853090 Car18g00761 Car-Chr18:8658074 2.13E-11 dispersed
Car10g00938 Car-Chr10:7487376 Car11g01211 Car-Chr11:9853090 4.70E-77 transposed
Car12g00072 Car-Chr12:309865 Car11g01211 Car-Chr11:9853090 3.23E-07 transposed
Car16g00529 Car-Chr16:3359685 Car11g01211 Car-Chr11:9853090 1.39E-30 transposed
Car11g01211 Car-Chr11:9853090 Car19g00234 Car-Chr19:2355197 6.11E-135 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4322 PF00125 Histone 1.00E-17 CL0012 Car TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01211 K08066 - csv:101213813 417.157