Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car11g01211 | ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCCCAGCAGGCTGCAGGCGGTGTTGGTGCAGGACAATTACCATATTCTAATCCTTACCAAACAGCTCCAATGGGGGCGTCCGGAACGCCTGCTATTACGATTCCCCCGACTCAGCAACCATCCAGTTTCTCCAACTCTCCACACCAGCTTGCCTTTCAGCAGGCTCAGCACTTCCACCAGCAGCAGCAGCAACAACAGCAACAACAGCTCCAAGTGTTCTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTCCCCCTTGCTCGAATCAAGAAAATAATGAAAGCGGATGAAGACGTTCGAATGATTTCAGCTGAAGCGCCAGTTATATTTGCAAAGGCGTGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAACGATATTGCAGCTGCAATTTCGAGGACCGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGTCTCGGAATCACGAAAGCTTCTATTCCTGTAGTTGGTTCCCCGGCCGATCTTCCTTATTACTATGTTCCATCACAACATCCAGTGAGTGCTACAGGGATGATCATGGGGAAGCAATTAGATCAAGCGAACATGTACGGTGCCACAGCTCAACAGCCCCGACCACCGATACCTTTCATGCCATGGCCGCATACTCAAGCTCAGCAGCAGCAGCAACAACAACAAACTCAGCAGCAAAGTGACGCATAG | 810 | 47.53 | MDQSERSQHQQQSQQAAGGVGAGQLPYSNPYQTAPMGASGTPAITIPPTQQPSSFSNSPHQLAFQQAQHFHQQQQQQQQQQLQVFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADLPYYYVPSQHPVSATGMIMGKQLDQANMYGATAQQPRPPIPFMPWPHTQAQQQQQQQQTQQQSDA | 269 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 9853090 | 9853899 | - | Carg23996-RA | Car11g01211 | 157164 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car11g01211 | 269 | SUPERFAMILY | Histone-fold | 67 | 175 | IPR009072 | GO:0046982 | |
| Car11g01211 | 269 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
| Car11g01211 | 269 | Pfam | Core histone H2A/H2B/H3/H4 | 51 | 166 | IPR007125 | GO:0003677 | |
| Car11g01211 | 269 | MobiDBLite | consensus disorder prediction | 26 | 75 | - | - | |
| Car11g01211 | 269 | MobiDBLite | consensus disorder prediction | 250 | 269 | - | - | |
| Car11g01211 | 269 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 9 | 258 | - | - | |
| Car11g01211 | 269 | MobiDBLite | consensus disorder prediction | 1 | 75 | - | - | |
| Car11g01211 | 269 | MobiDBLite | consensus disorder prediction | 236 | 269 | - | - | |
| Car11g01211 | 269 | Gene3D | Histone, subunit A | 64 | 181 | IPR009072 | GO:0046982 | |
| Car11g01211 | 269 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 | 9 | 258 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car11g01211 | Car-Chr11:9853090 | Car18g00761 | Car-Chr18:8658074 | 2.13E-11 | dispersed | |
| Car10g00938 | Car-Chr10:7487376 | Car11g01211 | Car-Chr11:9853090 | 4.70E-77 | transposed | |
| Car12g00072 | Car-Chr12:309865 | Car11g01211 | Car-Chr11:9853090 | 3.23E-07 | transposed | |
| Car16g00529 | Car-Chr16:3359685 | Car11g01211 | Car-Chr11:9853090 | 1.39E-30 | transposed | |
| Car11g01211 | Car-Chr11:9853090 | Car19g00234 | Car-Chr19:2355197 | 6.11E-135 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4322 | PF00125 | Histone | 1.00E-17 | CL0012 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car11g01211 | K08066 | - | csv:101213813 | 417.157 |