Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01216 ATGGGAAGCCTTCAAGAAAAAGAGACCCCAAAACTTCATGTAGTAGTGGTTTCATGTCATGCTCAAGGCCACATTAACCCACTCCTCCAATTCGCCAAGCACCTCGCCCACATCGGTCTCCAAGTCACCCTCCCCGTCATTTCCTCCTCCTCCGACCACCACTACTGCCACCTCCCCCGCTCCCTCACCGTCGACCACGTCCCTCTCCTACCATACCAAGGAGCGGAGACAGAGACAGAGACCGTACCCGCCTTGTGGGAGCGGAGGAAGGAGTCAATGAGTGTGTATCTAAAGGAGCTCATGAGGTGCCATGAAGATGGTAGCAAACGCATAAGTTGTGTGGTGTATGACTCGGTTATTTCTTGGGTTCTTGACATTGTTAAGGGGTTTGGAGTGATGGGAGCAGCGTTTTTCACTCAATCTTGTGCTGTCAATTCCATTTATTATAGTGTTTATAAGCATTGGGTGAGTGTTCCATTGGACAAAGGGTGGATTTTTGTTGATGGGTTTCCATTGTTTGAGGCGTTGGATCTGCCGTCGTTCGTGGCGGATCAAGGGAAGTATCCAGGCTTTCTTCAGCATTTGGCTGATGAACAATTCCAACGTTTGAACGAGGCTGATTGGATCTTTGCCAACACTTTTGATGCCTTGGAACCACAGGAAGTGAAATGGATGGAAAGCCATTTTCCATTCAAGAACATCGGACCAATGCTTCCGTCAATCTACTTAGATGGACGGATCCCAAACGACAAAGATTATGGGGTTAGCCTATTCGAACCAAACAAAAGTTCTTCCATGAAATGGCTTGATTCAAAACCCGAAAACTCGGTCGTATACGTATCATTCGGTAGCACAGCCGAATTGGGTAAGCCTCAAATGGAGGAGTTAGCGGAAGGGTTGAAGCTAAGCACGAAATCCTTCTTATGGGTCGTGAGAGAATCCGAACTTCACAAACTTCCACCCAAGTTCATCGACGAAACAGCTGAAAAAGGGCTGGTAGTAAAATGGTGCCCTCAGCTACAAGTTTTGAGCCACAAATCAGTGGGATGCTTCGTTACGCACTGCGGTTGGAACTCGACGCTCGAAGCGTTGAGCTTGGGGGTGGGGTTGGTGGCGATGGCTCAGTGGTCGGACCAACCGACGAACGCGAAGTACGTGGAGGATGTTTGGAAGGTGGGGAAGAGGGTGAGAATGGAGGAAGACGGAGTGTGTAAAAGAGAGATGATTGAGGTTTGTATTAATGAAGTTATGGAGGGAGAAGATAGTGAAGAAATTAAGAGGAATTTGGTGAAGTGGAGGGAGGTGGCCAAAGCCGCCATGGATGAAGGTGGAAGCTCTGACATGAACTTGAAGGATTTTGTGAAGCAGCTTTTGGGAAGAACATAG 1386 48.27 MGSLQEKETPKLHVVVVSCHAQGHINPLLQFAKHLAHIGLQVTLPVISSSSDHHYCHLPRSLTVDHVPLLPYQGAETETETVPALWERRKESMSVYLKELMRCHEDGSKRISCVVYDSVISWVLDIVKGFGVMGAAFFTQSCAVNSIYYSVYKHWVSVPLDKGWIFVDGFPLFEALDLPSFVADQGKYPGFLQHLADEQFQRLNEADWIFANTFDALEPQEVKWMESHFPFKNIGPMLPSIYLDGRIPNDKDYGVSLFEPNKSSSMKWLDSKPENSVVYVSFGSTAELGKPQMEELAEGLKLSTKSFLWVVRESELHKLPPKFIDETAEKGLVVKWCPQLQVLSHKSVGCFVTHCGWNSTLEALSLGVGLVAMAQWSDQPTNAKYVEDVWKVGKRVRMEEDGVCKREMIEVCINEVMEGEDSEEIKRNLVKWREVAKAAMDEGGSSDMNLKDFVKQLLGRT 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9885937 9888078 + Carg24001-RA Car11g01216 157169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01216 461 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 221 419 IPR002213 GO:0008194
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01216 K13691 SGT1; pathogen-inducible salicylic acid glucosyltransferase [EC:2.4.1.-] - csv:101217272 566.229
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g01216 Car15g00241 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00376 Car-Chr5:2144991 Car11g01216 Car-Chr11:9885937 8.59E-19 dispersed
Car11g01216 Car-Chr11:9885937 Car19g00237 Car-Chr19:2391584 0 dispersed
Car04g01985 Car-Chr4:15105204 Car11g01216 Car-Chr11:9885937 2.25E-117 transposed
Car11g01216 Car-Chr11:9885937 Car19g00235 Car-Chr19:2362967 6.36E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1007 . . . . . . . . . Cmo11g01495 . . . . . . . Bhi05g00879 . . . . . . . . . . . . . . . . . Lsi03g00749 Csa07g00565 . Cme01g00227 . . . . . . . . . . . Cma11g01654 . Car11g01216 . . . . . . . . . . . . . . . . . . . Chy01g00240 .
Vvi14g1041 . . . . . . . . . Cmo11g01515 . . Car11g01216 . . . . . . . . . . . Cla11g00445 . . . . . . . . . . . . . . . . . . . . . . . . Cmo15g00250 . Cma15g00238 . Car15g00241 . . . . . . . . . . . . . . . . Lsi03g00168 . Chy09g00202 Cme09g00219
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000058 4 15 3 3 0 12 6 14 12 8 10 12 8 12 11 10 13 4 8 15 11 12 13 19 6 16 9 12 12 11 301
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g01216 Car_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0