Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01267 ATGTCCATCCTGCCTTCACAAATCCAGGGTTCCACTTCAACATCTTCTTCGTCTTCAGCTTCCTCTCTAAACCCTAATTCCCACCATGGAACCGACCCCCTCTTCTCTCAATCCACTCTCTCTCCAACGCATTCCTTTCCATCCCCACGGATTTCCGATCCCCATTCGTCTCTCGGGGATTCCTGCAACGTATCAGGCCTGTCGATTAAACCTGCAGATGATGCTGAATCTTCCAAGAAGGATAGTAAATTAGAGAATCTGAATGATTTGAGGATGCCAGCTCATCAAAACACTGTAACCCATTTGCAGAGCCAATCTGGTGTAGAAGATGGTGGATCAGTCCTTCCCGGGAGTAAAATATCGTCTTCTATAATTTCTTCTCATGATCAGCAAAGCGCTAGGTCTGCAAACTCTCATGGCAACAATAAACGCTCAGCTGGAAGAAAAGCCCAAATGACAAATGGAAACCATTTGCTTAATTTTCAATATGATCCCATTTCTCGTCCTCGTCCTCGAGCCAGAGCTCCTCCTCCAAGAAGGCCACATAAGATAAAGCCATACAACAAGGATCTATTTCTCCAGGCTAATTACAAATTTGTGGTTTTAGATACAGGTTATCATACGCCTGAATATTTGGATCCTGATAAAATGCTGCGTTGGGAGGATATCATATGTGTAAGATATTCTACACCATCATTGGTTCAATGTCCTATTTGTCTGGAGCATCCACACTGTCCTCAAATTACCTCGTGTGGACATATTTATTGTTTCCCTTGCATTTTGAGGTACCTGTTAATGGGCAAGGAGGATCAGAAAGGTGACTGCTGGAAAAAATGCCCTTTGTGTTTTGTGATGCTGTCTTTGAAGGATTTATACACCGTCCACATTGAGCTTTTGAAGCAATATTCTGTTGGTGATACTATAGAATTTATGCTTTTAACTCGGCAAAAAGATTCATTTGCCTTGTCATTCAAGGATAAACAAGAGGATGGTATCAGGTCAAGTGATAACGATGAAATCTATGATTCTTTTTCGAAGTTTATATTTACATCTGACGTGGATCTCTCAGTGCGGCAAGCAATATCTGATTTAGATGCCTGGTTAGCAAAAGCAGAAACAGGGCAAGTAGATGACCTCGAAAAGCTTCCATATGTTTGTGCTGCTTTGGAACAACTAGAGCAGAGGAAGAAGGATTGGAATGAACTTCAGGCCTGTTTTAAGCAGAATGACTGTCAGATAAGATCTCAAACGCTCCTTCCAACTGGTAATGTTAGCAATGCTGGTCCTGGAGCATGCAGTTCTAGACACGAGGCTTCATCCATTGATATTAATGATGATTGCAAGTTTCTAGGAAATGTAGTGCAAGATAAGTTGGATTATTCTACTCATGTGGGTCAGACTGAGGCTGTTGATGAACTTTTAGAACTCCAACAAAACTCAAATGAAATTAGAGATGCAAAGGACAAGGACTCGTACAATTTTTACCAGGCTACCGATGGCCAGCATATCATTCTCCATCCATTAAACATGAAGTGTCTTTTACAATATTATGGGAGTTATGGCAGGCTGCCACTCAGAATAAGTGGAAAGATTTTAGAATTTGAAACAGTCACCCAAACCGAGGCCACAAGAAGGCGGTATCGTTACTTGAGTCATTTTTCCTTAACAACATCGTTTCAGCTATGTGAAATTGATTTGACCAACCTGTTGCCTTCGTCCTCCATGATTCCCTTCATGGATGAGATAAAGAAGCGTGAGAAGCAGAGGAAACAACTTGCAAAAAAGATGCAAAGGGAGAAGATCAAAGCAGAATCTGCTTCAACGTGTTCTTTGTCAATGATGGCCGGATCAGGAAGTTCATATCGTTATGATACTCCAAACCTTTCCCTGGATGACTTTGAAGCTTTAGGAAGTTCTCCTGTGACATCATCGAGCCCTCCTGTTGGCGGGAGGCAACTGTTCTCGAGCGTTACACGACTTGGTTTCGCTGCTGCACATGATTCTCCGTCCTTGAGAATTGAAGAAACTGATTCTCTGCACATTAATGAAGTGAAAAGTGATTCATCCGGTGCAAATGAGATACACAATGCAACTCCATCGTTTGCAAATATAATATCGAGAGCGAAGTCTGGAGGAAGTACAGAATCTCCTAAGGCAAATGAAGTGGGAAAGAAGGGGAAGAAACCAAGTCGAGTTTTGTTATCCACGGCGGGCGGTCGGCGCTATTGA 2229 42.35 MSILPSQIQGSTSTSSSSSASSLNPNSHHGTDPLFSQSTLSPTHSFPSPRISDPHSSLGDSCNVSGLSIKPADDAESSKKDSKLENLNDLRMPAHQNTVTHLQSQSGVEDGGSVLPGSKISSSIISSHDQQSARSANSHGNNKRSAGRKAQMTNGNHLLNFQYDPISRPRPRARAPPPRRPHKIKPYNKDLFLQANYKFVVLDTGYHTPEYLDPDKMLRWEDIICVRYSTPSLVQCPICLEHPHCPQITSCGHIYCFPCILRYLLMGKEDQKGDCWKKCPLCFVMLSLKDLYTVHIELLKQYSVGDTIEFMLLTRQKDSFALSFKDKQEDGIRSSDNDEIYDSFSKFIFTSDVDLSVRQAISDLDAWLAKAETGQVDDLEKLPYVCAALEQLEQRKKDWNELQACFKQNDCQIRSQTLLPTGNVSNAGPGACSSRHEASSIDINDDCKFLGNVVQDKLDYSTHVGQTEAVDELLELQQNSNEIRDAKDKDSYNFYQATDGQHIILHPLNMKCLLQYYGSYGRLPLRISGKILEFETVTQTEATRRRYRYLSHFSLTTSFQLCEIDLTNLLPSSSMIPFMDEIKKREKQRKQLAKKMQREKIKAESASTCSLSMMAGSGSSYRYDTPNLSLDDFEALGSSPVTSSSPPVGGRQLFSSVTRLGFAAAHDSPSLRIEETDSLHINEVKSDSSGANEIHNATPSFANIISRAKSGGSTESPKANEVGKKGKKPSRVLLSTAGGRRY 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10505168 10510934 + Carg25296-RA Car11g01267 157220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01267 742 Coils Coil 389 409 - -
Car11g01267 742 Coils Coil 579 602 - -
Car11g01267 742 ProSiteProfiles Zinc finger RING-type profile. 236 282 IPR001841 -
Car11g01267 742 MobiDBLite consensus disorder prediction 98 161 - -
Car11g01267 742 ProSitePatterns Zinc finger RING-type signature. 251 260 IPR017907 -
Car11g01267 742 MobiDBLite consensus disorder prediction 1 64 - -
Car11g01267 742 MobiDBLite consensus disorder prediction 707 742 - -
Car11g01267 742 MobiDBLite consensus disorder prediction 98 185 - -
Car11g01267 742 Pfam Zinc finger, C3HC4 type (RING finger) 236 282 IPR018957 GO:0046872
Car11g01267 742 MobiDBLite consensus disorder prediction 1 82 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01267 Car-Chr11:10505168 Car03g01133 Car-Chr3:9124796 2.31E-06 dispersed
Car11g01267 Car-Chr11:10505168 Car14g00377 Car-Chr14:1896660 3.39E-07 transposed
Car11g01267 Car-Chr11:10505168 Car06g00088 Car-Chr6:608594 3.45E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01267 - - csv:101203987 1196.03