Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01271 ATGCTTCCCAAATCCACCGGAATCCTCTGGCTCGACGGCGACCATGACGACGTCGCTTCTTGGACCAGAGCCACCGACGACCACTACGACGATATCGCCATTGCTGGCTCCATTTCTTCCTTCAAATCCATGCTCGAACCTGACTGTTTCATTAACTCTTCTTCTGCTCCTCTCAACTCCTCTCTCCATCGTTTCAATCCCACTGATAACTTCCTCTCTTCCTGCTCTCCCTCCCAACCTTTTGCTCTCGATCCTACCCAGTCTATGTTGCCTTCTCACAAATCCTGTTTCTCTTCTCTTCTTAATGTTGTTTGCGGCAGTAATTTCGATAATGCCTATGATTTTGGCGCCGATACTGCTTTGTTTGGATCTTACCAGGGGAATCAAGCTTCCAATCCCTCCGTTTTCATGGGATTCACTGGCGTTTCTCCTCTTCCTCAAATCGGTAACCAGGCGCTTAGCTTAAATCATTCTGAGTTTCCGGTTGCTGATAACCCTCCCGCTTTTGGCGATGGATTTAACCCGGCGGTTCCGTTTGAGAGCTTCGATGGCTGCGGGAATGCTCTGTTTCAGAATAGGCCTAAGGTTTTGAGACCTCTTGAAGTGCTCCCGCAAGTCGGTGCTCAACCGACGCTGTTTCAGAAGCGAGCGGCGCACCGAGTTGTCTCTCCCGGAGCTGATAAACTTGAGAATCTGGAGGTTTCGGGTTTGAAATTTGGAGAAGGCTCAACGTGGACGGCGGATTTGGAGAATCTGAGTAAGAACAACGGCGATGAGGACGGTGAGGATGGTAGCGTGGATGTTTCTCGGTTTAATTACGACTCCGATGAAGGCAATGAGTATAACAAGCAAGAGGACAATGTTAATGCTAAAAACTGCGGAAGCAATTCCAATGCCAACAGCACTGTAACCGGCGGCGACCAAAAAGGGAAGAAGAAGGGGATGCCGGCGAAGAATCTCATGGCGGAGCGACGGCGGAGAAAGAAGCTGAATGATAGACTTTACATGCTTAGGTCCGTCGTACCCAAAATAAGCAAGATGGATAGAGCTTCAATCCTTGGAGACGCCATAGACTACTTGAAGGAGCTTCTTCAAAGGATAAATGATCTCCATAATGAACTTGAATCGACTCCTTCTGGTTCTTCGCTGCAACCTTCTGCAAGCTTTCACCCTTTGACGCCAACGCTGCCAACTCTTCCCTGTCGTGTCAAGGAGGAGCTGTGTCCAAGCTCCTCCTTGTGCAGCCCCAAAAATCAGCCTGCCAGGGTCGAAGTCCGGGTCAGAGAAGGCAGAGCTGTCAATATTCACATGTTCTGTTCTTGCAAGCCCGGTCTCTTGCTATCCACCATGAGGGCTCTGGATAGCCTCGGCTTGGATATCCAACAAGCTGTAATCAGCTGTTTCAATGGATTTGCTTTGGACGTGTTTCGAGCTGAGCAATCCAAGGAAGGTCAGGAGATCATACCTGAGCAAATAAAAGCAGTGCTGTTGGAATCAGCTGGCTTACATGGTGTTATGTAG 1521 49.24 MLPKSTGILWLDGDHDDVASWTRATDDHYDDIAIAGSISSFKSMLEPDCFINSSSAPLNSSLHRFNPTDNFLSSCSPSQPFALDPTQSMLPSHKSCFSSLLNVVCGSNFDNAYDFGADTALFGSYQGNQASNPSVFMGFTGVSPLPQIGNQALSLNHSEFPVADNPPAFGDGFNPAVPFESFDGCGNALFQNRPKVLRPLEVLPQVGAQPTLFQKRAAHRVVSPGADKLENLEVSGLKFGEGSTWTADLENLSKNNGDEDGEDGSVDVSRFNYDSDEGNEYNKQEDNVNAKNCGSNSNANSTVTGGDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPSGSSLQPSASFHPLTPTLPTLPCRVKEELCPSSSLCSPKNQPARVEVRVREGRAVNIHMFCSCKPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQSKEGQEIIPEQIKAVLLESAGLHGVM 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10604990 10608365 - Carg15523-RA Car11g01271 157224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01271 506 Pfam Helix-loop-helix DNA-binding domain 321 363 IPR011598 GO:0046983
Car11g01271 506 MobiDBLite consensus disorder prediction 285 307 - -
Car11g01271 506 ProSiteProfiles ACT domain profile. 434 506 IPR002912 -
Car11g01271 506 MobiDBLite consensus disorder prediction 279 315 - -
Car11g01271 506 Coils Coil 357 377 - -
Car11g01271 506 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 314 363 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g01271 Car14g00695 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02767 Car-Chr4:21269886 Car11g01271 Car-Chr11:10604990 1.22E-10 dispersed
Car05g00509 Car-Chr5:2951105 Car11g01271 Car-Chr11:10604990 5.49E-41 dispersed
Car11g01271 Car-Chr11:10604990 Car13g00673 Car-Chr13:8187877 8.33E-147 dispersed
Car15g00164 Car-Chr15:893352 Car11g01271 Car-Chr11:10604990 1.11E-09 dispersed
Car11g01271 Car-Chr11:10604990 Car14g00695 Car-Chr14:3824074 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4325 PF00010 HLH 2.00E-09 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01271 - - bhj:120082707 760.37