Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01298 ATGGATCCTAAAACTTCATCATCAACAACAAAGCAGGCCCAAGAACTGGTACCAAACTTTTTGAACTTCCCACAAGAACACCAACAAGAACAATCAAACATGGGGGAAAACAAACCACCGGAAATCAAAGAAGAAGGTAAGAAACAATTAGCTCCAAAACGAAGCTCCAACAAAGACCGTCACACAAAAGTGGAAGGACGTGGGCGAAGAATCCGTATGCCGGCACTATGTGCGGCGAGGATTTTTCAATTAACAAGGGAATTGGGTCATAAATCCGACGGAGAAACCATCCAGTGGTTGCTACAGCAAGCGGAGCCATCGATAATCGCCGCCACTGGAACTGGAACGATCCCAGCTTCTGCTTTAGCAGCAGTGGCGGGTTCCGTTTCGCAACAAGGGGTTTCTCTCTCCGCCGGATTACAACAAAAATTGGAGGAATTAGGCGGTGGCGGGTCCAGTAGGGCCAGTTGGGGGAATTTGGGGAGACCCCATTTGGCTGCTGCTGCTGCCGCCGCCGCCGCAGCCGCCACAGCCACAGCGGTTTGGCCCTCCTCTGTCAGTGGGTTTGGGTTTCAGTCATCAACTACAGCTGGTGTTGCTCAATCAGCCACTAATTTAGCTAATGAAACTTCAAATTACTTTCATAAACTTGGTTTCCCAGCCTTTGACTTACCCCCCACCAACATGGGTCCTATGAGTTTCACCTCCATTCTAGGTGCCAACTCTCAACAGCTACCTGGTTTAGAGCTTGGATTGAGCCAAGATCCCCATATTGGGGCTATCAATCCACAAGCATTGAACCAGTTTTACCAACAAATGGGCCAAGCTAGAGTTCATCACCATCATCAACAACACCAGCAACCTCCTGCTAAAGATGATTCACAAGATTCAGGGTAG 897 48.83 MDPKTSSSTTKQAQELVPNFLNFPQEHQQEQSNMGENKPPEIKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAVAGSVSQQGVSLSAGLQQKLEELGGGGSSRASWGNLGRPHLAAAAAAAAAAATATAVWPSSVSGFGFQSSTTAGVAQSATNLANETSNYFHKLGFPAFDLPPTNMGPMSFTSILGANSQQLPGLELGLSQDPHIGAINPQALNQFYQQMGQARVHHHHQQHQQPPAKDDSQDSG 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10753075 10753971 - Carg15550-RA Car11g01298 157251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01298 298 MobiDBLite consensus disorder prediction 1 70 - -
Car11g01298 298 MobiDBLite consensus disorder prediction 1 36 - -
Car11g01298 298 Pfam TCP family transcription factor 56 146 IPR017887 -
Car11g01298 298 MobiDBLite consensus disorder prediction 274 298 - -
Car11g01298 298 MobiDBLite consensus disorder prediction 37 70 - -
Car11g01298 298 ProSiteProfiles TCP domain profile. 57 111 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01298 - - - cmax:111486688 533.102
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01101 Car-Chr3:8883945 Car11g01298 Car-Chr11:10753075 6.83E-40 dispersed
Car07g00896 Car-Chr7:4811800 Car11g01298 Car-Chr11:10753075 5.21E-38 dispersed
Car10g00176 Car-Chr10:839601 Car11g01298 Car-Chr11:10753075 5.58E-38 dispersed
Car11g00147 Car-Chr11:831723 Car11g01298 Car-Chr11:10753075 3.74E-39 dispersed
Car11g01298 Car-Chr11:10753075 Car12g00219 Car-Chr12:1440937 2.23E-69 dispersed
Car13g00957 Car-Chr13:9659431 Car11g01298 Car-Chr11:10753075 1.25E-39 dispersed
Car11g01298 Car-Chr11:10753075 Car14g00666 Car-Chr14:3690759 1.65E-148 wgd
Car11g01298 Car-Chr11:10753075 Car17g01312 Car-Chr17:9868075 2.39E-63 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car15g00738 . 31 253 TCP Transcription Factor Family AT5G23280 63.5 1.8e-65 246.5
Car04g02171 . 36 264 TCP Transcription Factor Family AT5G23280 61.0 2.6e-64 242.7
Car04g01351 . 36 250 TCP Transcription Factor Family AT5G23280 61.4 9.7e-64 240.7
Car18g00741 . 33 230 TCP Transcription Factor Family AT5G23280 58.5 9.4e-59 224.2
Car17g00004 . 65 337 TCP Transcription Factor Family AT2G45680 52.2 7.9e-59 224.9
Car18g01068 CCT,ECH 58 148 TCP Transcription Factor Family AT3G47620 92.3 4.5e-41 166.4
Car04g01690 CCT,ECH 62 156 TCP Transcription Factor Family AT3G47620 88.7 5.0e-40 162.9
Car13g00957 CCT,ECH 36 134 TCP Transcription Factor Family AT3G47620 83.8 3.3e-39 160.2
Car04g01863 . 140 222 TCP Transcription Factor Family AT3G47620 90.4 1.5e-36 151.4
Car04g01863 . 140 232 TCP Transcription Factor Family AT1G69690 82.8 1.7e-36 150.6
Car14g00666 . 1 319 TCP Transcription Factor Family AT3G27010 57.1 5.7e-61 231.9
Car11g01298 . 38 276 TCP Transcription Factor Family AT3G27010 56.7 6.7e-54 208.4
Car17g01312 . 42 259 TCP Transcription Factor Family AT3G27010 53.2 5.5e-48 188.7
Car15g00738 . 1 252 TCP Transcription Factor Family AT5G08330 60.9 2.4e-64 242.7
Car04g02171 . 1 263 TCP Transcription Factor Family AT5G08330 56.7 7.9e-63 237.7
Car04g01351 . 8 248 TCP Transcription Factor Family AT5G08330 55.2 1.3e-60 230.3
Car18g00741 . 10 228 TCP Transcription Factor Family AT5G08330 57.4 3.7e-60 228.8
Car11g00191 CCT,CST 31 179 TCP Transcription Factor Family AT5G60970 58.0 4.1e-39 159.5
Car20g00876 . 39 150 TCP Transcription Factor Family AT3G02150 66.4 2.2e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4328 PF03634 TCP 7.20E-31 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g01298 Car_Chr11 FPKM 51.674934 54.684448 52.724995 57.507557 38.806313 41.745022 41.822029 60.339588 62.916149 59.778748