Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01303 ATGGATTGGGGTTGGAGAAAATTTTCTGGGGAAAGAGTCACTTTCCAGGAAAACAAACAGAATCCCACAAGTTTTTCTGACTCGATTGGATCAAATAATGAAGAAGAACAGATTCTCAAGGGTTCGAGTCAAGAAAGTTCTACCTCTCATGGATCCTCCAAGAGGACTCGATTGCTTCATGCGAGCCAGAACCAGACATGTTTGGTGGATGGCTGTGACTCTGACTTGAGCAATTGCAAGGAGTATCATCGTCGTCATAGGGTCTGCGATTTGCACTCCAAAACCCCTGTTGTGATGGTCAGAGGCGAGGAGAAACGATTCTGTCAACAGTGCAGCAGATTTCATTCGCTTGGTGAGTTTGATGAGGTTAAGAGAAGCTGTAGAAAGAGGCTTGATGGACACAATCGGCGTAGGAGGAAGCCTCAGCCTGAATCCTTGTTCATCAGTTCAAGGGATTTTCTGTCAAATTGCAAAGGTCCAATTGTGCTGCAATTCAGCGATCAACAAGTTCATGTTCCTGATGAACTTGGTAGGAGTTTATGGCCTATGAGAAATGAAGAAAACTCATCTTTGATTCCATCAAATTCCTCTGGTTTCTTCAGTTTTGGAGGAGGAGACAACAAACAGCTGCCATTTTTGCAGCCTAAGAATGGCTCAAAGCAAGGAAAGCATATGGTTTCTTCTCAGTTTTGTTTCAATCAGCAACTTCCTGATGCAATCTCTCAGGTGAGTGAGGGGGACAGCCAGAAAACGGTGCCTCCGAATAACTCGCCCGAGGATTCGGGTTGTGCTCTCTATCTTCTGTCATCGCACCCTGTGCAAGCTCTCCCAGAGGCTGGCTTGAGCTCTTTGGTTCAGTCCCATCTGAGTCTTCCAGTCCAAACTCAAGAGGAGACTGAGCTGAATTTCAGTAGTCTAAGTGATTTCTCTGAGTCCTTTGGTTCAAAGGACAAGGCTGTTAGTAAAACCAATGTTCATCATAGTGAGTTGGGGCTTGAAATGGAGGAGGAATCTAATGGCTTGTTTCCCATTTCTTGGGAGTAG 1044 45.21 MDWGWRKFSGERVTFQENKQNPTSFSDSIGSNNEEEQILKGSSQESSTSHGSSKRTRLLHASQNQTCLVDGCDSDLSNCKEYHRRHRVCDLHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFISSRDFLSNCKGPIVLQFSDQQVHVPDELGRSLWPMRNEENSSLIPSNSSGFFSFGGGDNKQLPFLQPKNGSKQGKHMVSSQFCFNQQLPDAISQVSEGDSQKTVPPNNSPEDSGCALYLLSSHPVQALPEAGLSSLVQSHLSLPVQTQEETELNFSSLSDFSESFGSKDKAVSKTNVHHSELGLEMEEESNGLFPISWE 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10804091 10805371 + Carg15555-RA Car11g01303 157256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01303 347 Pfam SBP domain 67 140 IPR004333 GO:0003677
Car11g01303 347 MobiDBLite consensus disorder prediction 16 57 - -
Car11g01303 347 ProSiteProfiles Zinc finger SBP-type profile. 64 141 IPR004333 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g01303 Car14g00662 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01303 Car-Chr11:10804091 Car13g00660 Car-Chr13:8113900 2.86E-47 dispersed
Car10g00040 Car-Chr10:176209 Car11g01303 Car-Chr11:10804091 1.72E-38 wgd
Car11g00025 Car-Chr11:111811 Car11g01303 Car-Chr11:10804091 9.20E-41 wgd
Car11g01303 Car-Chr11:10804091 Car14g00662 Car-Chr14:3658014 4.08E-162 wgd
Car11g01303 Car-Chr11:10804091 Car17g01323 Car-Chr17:9901582 3.78E-49 wgd
Car11g01303 Car-Chr11:10804091 Car18g00237 Car-Chr18:1353627 5.75E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4330 PF03110 SBP 3.10E-30 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01303 - - bhj:120070162 517.694