Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car11g01303 | ATGGATTGGGGTTGGAGAAAATTTTCTGGGGAAAGAGTCACTTTCCAGGAAAACAAACAGAATCCCACAAGTTTTTCTGACTCGATTGGATCAAATAATGAAGAAGAACAGATTCTCAAGGGTTCGAGTCAAGAAAGTTCTACCTCTCATGGATCCTCCAAGAGGACTCGATTGCTTCATGCGAGCCAGAACCAGACATGTTTGGTGGATGGCTGTGACTCTGACTTGAGCAATTGCAAGGAGTATCATCGTCGTCATAGGGTCTGCGATTTGCACTCCAAAACCCCTGTTGTGATGGTCAGAGGCGAGGAGAAACGATTCTGTCAACAGTGCAGCAGATTTCATTCGCTTGGTGAGTTTGATGAGGTTAAGAGAAGCTGTAGAAAGAGGCTTGATGGACACAATCGGCGTAGGAGGAAGCCTCAGCCTGAATCCTTGTTCATCAGTTCAAGGGATTTTCTGTCAAATTGCAAAGGTCCAATTGTGCTGCAATTCAGCGATCAACAAGTTCATGTTCCTGATGAACTTGGTAGGAGTTTATGGCCTATGAGAAATGAAGAAAACTCATCTTTGATTCCATCAAATTCCTCTGGTTTCTTCAGTTTTGGAGGAGGAGACAACAAACAGCTGCCATTTTTGCAGCCTAAGAATGGCTCAAAGCAAGGAAAGCATATGGTTTCTTCTCAGTTTTGTTTCAATCAGCAACTTCCTGATGCAATCTCTCAGGTGAGTGAGGGGGACAGCCAGAAAACGGTGCCTCCGAATAACTCGCCCGAGGATTCGGGTTGTGCTCTCTATCTTCTGTCATCGCACCCTGTGCAAGCTCTCCCAGAGGCTGGCTTGAGCTCTTTGGTTCAGTCCCATCTGAGTCTTCCAGTCCAAACTCAAGAGGAGACTGAGCTGAATTTCAGTAGTCTAAGTGATTTCTCTGAGTCCTTTGGTTCAAAGGACAAGGCTGTTAGTAAAACCAATGTTCATCATAGTGAGTTGGGGCTTGAAATGGAGGAGGAATCTAATGGCTTGTTTCCCATTTCTTGGGAGTAG | 1044 | 45.21 | MDWGWRKFSGERVTFQENKQNPTSFSDSIGSNNEEEQILKGSSQESSTSHGSSKRTRLLHASQNQTCLVDGCDSDLSNCKEYHRRHRVCDLHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFISSRDFLSNCKGPIVLQFSDQQVHVPDELGRSLWPMRNEENSSLIPSNSSGFFSFGGGDNKQLPFLQPKNGSKQGKHMVSSQFCFNQQLPDAISQVSEGDSQKTVPPNNSPEDSGCALYLLSSHPVQALPEAGLSSLVQSHLSLPVQTQEETELNFSSLSDFSESFGSKDKAVSKTNVHHSELGLEMEEESNGLFPISWE | 347 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 10804091 | 10805371 | + | Carg15555-RA | Car11g01303 | 157256 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car11g01303 | 347 | Pfam | SBP domain | 67 | 140 | IPR004333 | GO:0003677 | |
Car11g01303 | 347 | MobiDBLite | consensus disorder prediction | 16 | 57 | - | - | |
Car11g01303 | 347 | ProSiteProfiles | Zinc finger SBP-type profile. | 64 | 141 | IPR004333 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car11g01303 | Car14g00662 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car11g01303 | Car-Chr11:10804091 | Car13g00660 | Car-Chr13:8113900 | 2.86E-47 | dispersed | |
Car10g00040 | Car-Chr10:176209 | Car11g01303 | Car-Chr11:10804091 | 1.72E-38 | wgd | |
Car11g00025 | Car-Chr11:111811 | Car11g01303 | Car-Chr11:10804091 | 9.20E-41 | wgd | |
Car11g01303 | Car-Chr11:10804091 | Car14g00662 | Car-Chr14:3658014 | 4.08E-162 | wgd | |
Car11g01303 | Car-Chr11:10804091 | Car17g01323 | Car-Chr17:9901582 | 3.78E-49 | wgd | |
Car11g01303 | Car-Chr11:10804091 | Car18g00237 | Car-Chr18:1353627 | 5.75E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
4330 | PF03110 | SBP | 3.10E-30 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car11g01303 | - | - | bhj:120070162 | 517.694 |