Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01303 ATGGATTGGGGTTGGAGAAAATTTTCTGGGGAAAGAGTCACTTTCCAGGAAAACAAACAGAATCCCACAAGTTTTTCTGACTCGATTGGATCAAATAATGAAGAAGAACAGATTCTCAAGGGTTCGAGTCAAGAAAGTTCTACCTCTCATGGATCCTCCAAGAGGACTCGATTGCTTCATGCGAGCCAGAACCAGACATGTTTGGTGGATGGCTGTGACTCTGACTTGAGCAATTGCAAGGAGTATCATCGTCGTCATAGGGTCTGCGATTTGCACTCCAAAACCCCTGTTGTGATGGTCAGAGGCGAGGAGAAACGATTCTGTCAACAGTGCAGCAGATTTCATTCGCTTGGTGAGTTTGATGAGGTTAAGAGAAGCTGTAGAAAGAGGCTTGATGGACACAATCGGCGTAGGAGGAAGCCTCAGCCTGAATCCTTGTTCATCAGTTCAAGGGATTTTCTGTCAAATTGCAAAGGTCCAATTGTGCTGCAATTCAGCGATCAACAAGTTCATGTTCCTGATGAACTTGGTAGGAGTTTATGGCCTATGAGAAATGAAGAAAACTCATCTTTGATTCCATCAAATTCCTCTGGTTTCTTCAGTTTTGGAGGAGGAGACAACAAACAGCTGCCATTTTTGCAGCCTAAGAATGGCTCAAAGCAAGGAAAGCATATGGTTTCTTCTCAGTTTTGTTTCAATCAGCAACTTCCTGATGCAATCTCTCAGGTGAGTGAGGGGGACAGCCAGAAAACGGTGCCTCCGAATAACTCGCCCGAGGATTCGGGTTGTGCTCTCTATCTTCTGTCATCGCACCCTGTGCAAGCTCTCCCAGAGGCTGGCTTGAGCTCTTTGGTTCAGTCCCATCTGAGTCTTCCAGTCCAAACTCAAGAGGAGACTGAGCTGAATTTCAGTAGTCTAAGTGATTTCTCTGAGTCCTTTGGTTCAAAGGACAAGGCTGTTAGTAAAACCAATGTTCATCATAGTGAGTTGGGGCTTGAAATGGAGGAGGAATCTAATGGCTTGTTTCCCATTTCTTGGGAGTAG 1044 45.21 MDWGWRKFSGERVTFQENKQNPTSFSDSIGSNNEEEQILKGSSQESSTSHGSSKRTRLLHASQNQTCLVDGCDSDLSNCKEYHRRHRVCDLHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFISSRDFLSNCKGPIVLQFSDQQVHVPDELGRSLWPMRNEENSSLIPSNSSGFFSFGGGDNKQLPFLQPKNGSKQGKHMVSSQFCFNQQLPDAISQVSEGDSQKTVPPNNSPEDSGCALYLLSSHPVQALPEAGLSSLVQSHLSLPVQTQEETELNFSSLSDFSESFGSKDKAVSKTNVHHSELGLEMEEESNGLFPISWE 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10804091 10805371 + Carg15555-RA Car11g01303 157256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01303 347 Pfam SBP domain 67 140 IPR004333 GO:0003677
Car11g01303 347 MobiDBLite consensus disorder prediction 16 57 - -
Car11g01303 347 ProSiteProfiles Zinc finger SBP-type profile. 64 141 IPR004333 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01303 - - - bhj:120070162 517.694
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g01303 Car14g00662 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01303 Car-Chr11:10804091 Car13g00660 Car-Chr13:8113900 2.86E-47 dispersed
Car10g00040 Car-Chr10:176209 Car11g01303 Car-Chr11:10804091 1.72E-38 wgd
Car11g00025 Car-Chr11:111811 Car11g01303 Car-Chr11:10804091 9.20E-41 wgd
Car11g01303 Car-Chr11:10804091 Car14g00662 Car-Chr14:3658014 4.08E-162 wgd
Car11g01303 Car-Chr11:10804091 Car17g01323 Car-Chr17:9901582 3.78E-49 wgd
Car11g01303 Car-Chr11:10804091 Car18g00237 Car-Chr18:1353627 5.75E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1148 . . . . . . . . Cmo14g00739 Cmo11g01608 Cma11g01513 Cma14g00725 Car11g01303 Car14g00662 . Cpe03g00630 . . . . . . . . . . . . . . . Cone11ag0042 Cone18ag1438 . . . . Chy06g01539 Cme06g01786 . . Bda07g01385 . Bpe09g00547 Bpe11g01487 . . . . . . . . . . . Bhi01g02096 . . . Hepe02g1698 . . Cla05g01423 Cam05g1511 Cec05g1523 Cco05g1559 Clacu05g1518 Cmu05g1426 Cre05g1528 . Csa03g02486 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car14g00872 CST 181 1002 SBP-box Gene Family AT2G47070 55.7 2.1e-239 825.9
Car01g00236 CST 179 1005 SBP-box Gene Family AT2G47070 53.3 2.5e-224 775.8
Car14g00872 CST 25 1002 SBP-box Gene Family AT3G60030 54.3 3.5e-276 948.3
Car01g00236 CST 26 1005 SBP-box Gene Family AT3G60030 52.9 1.2e-260 896.7
Car18g00237 . 64 181 SBP-box Gene Family AT5G50570 66.9 9.7e-41 164.9
Car17g01323 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.4e-39 161.0
Car08g00154 . 18 156 SBP-box Gene Family AT5G50570 58.2 4.5e-38 156.0
Car11g01303 CST 63 166 SBP-box Gene Family AT5G50570 67.3 1.3e-37 154.5
Car14g00662 CST 55 169 SBP-box Gene Family AT5G50570 64.1 3.8e-37 152.9
Car14g01485 CST 19 344 SBP-box Gene Family AT5G18830 51.3 2.6e-81 300.8
Car14g00872 CST 181 1002 SBP-box Gene Family AT2G47070 55.7 2.1e-239 825.9
Car01g00236 CST 179 1005 SBP-box Gene Family AT2G47070 53.3 2.5e-224 775.8
Car14g01485 CST 19 344 SBP-box Gene Family AT5G18830 51.3 2.6e-81 300.8
Car14g00872 CST 25 1002 SBP-box Gene Family AT3G60030 54.3 3.5e-276 948.3
Car01g00236 CST 26 1005 SBP-box Gene Family AT3G60030 52.9 1.2e-260 896.7
Car18g00237 . 64 181 SBP-box Gene Family AT5G50570 66.9 9.7e-41 164.9
Car17g01323 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.4e-39 161.0
Car08g00154 . 18 156 SBP-box Gene Family AT5G50570 58.2 4.5e-38 156.0
Car11g01303 CST 63 166 SBP-box Gene Family AT5G50570 67.3 1.3e-37 154.5
Car14g00662 CST 55 169 SBP-box Gene Family AT5G50570 64.1 3.8e-37 152.9
Car18g00237 . 64 181 SBP-box Gene Family AT5G50670 66.9 9.7e-41 164.9
Car17g01323 . 15 163 SBP-box Gene Family AT5G50670 54.6 1.4e-39 161.0
Car08g00154 . 18 156 SBP-box Gene Family AT5G50670 58.2 4.5e-38 156.0
Car11g01303 CST 63 166 SBP-box Gene Family AT5G50670 67.3 1.3e-37 154.5
Car14g00662 CST 55 169 SBP-box Gene Family AT5G50670 64.1 3.8e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006434 2 1 0 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 3 1 1 2 1 0 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4330 PF03110 SBP 3.10E-30 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g01303 Car_Chr11 FPKM 4.726264 4.785351 8.502461 8.486867 5.611194 6.061353 5.882995 6.749104 5.576801 6.365596