Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01317 ATGCCGGAAGAAACCACTTCGATAGATTACGTCATGGAAGCCGCCTCCGGACCTCATTTCTCCGGCCTCCGACTCGACGGGCTTATCTCCTCTCCACCTTCTTCCTCAACTTCTTCTCCCGCTCACCGCTCTTCACTCTCCGCTTCCTCTGCACAGGTCGATGCTAACTCTCCTAAGCAGCCTTTCGTCATCGGTGTTTCTGGAGGTACTGCGTCTGGGAAGACGACGGTGTGTGATATGATTATACAGCAACTCCATGATCATAGGGTTGTGCTGGTCAATCAGGACTCGTTTTACCGCGGTTTGACAGCCGAGGAACTAGAACGCGTGCACGAGTATAACTTTGATCATCCTGATTCTTTTGACACCGAGCAGCTTTTGGATTGCGTCGAGAAGCTAAAGAGTGGGCAATCTTACCATGTCCCAATTTATGATTTTAAGACTCATCAACGCTGTGTTGATAGCTTTCGACAGGTAAATGCATCTGATGTTATCATCGTGGAAGGAATTCTGGTTTTCCATGACCAAAGAGTCCGCAATCTCATGAATATGAAGATATTTGTTGACACAGATGCTGATGTGAGGCTTGCTCGTAGAATTAGACGTGATACCGTAGAAAGAGGCAGAGACATTAACTCCGTTCTTGAACAGTATGCGAAGTTTGTAAAACCTGCTTTTGATGATTTCATTCTGCCATCAAAGAAGTATGCTGATGTGATCATACCACGTGGAGGCGATAACCATGTTGCAATTGATTTGATTGTGCAACACATCCATACGAAGTTAGGCCAGCATGACCTATGCAAAATATACCCCAATGTTACTGTCATTCAATCAACATTTCAGATTAGAGGCATGCATACATTAATTCGAGATCGGGACATCTCAAAGCACGATTTTGTTTTCTATTCAGACCGCCTGATACGTCTGGTTGTGGAGCATGGCCTTGGCCATTTGCCGTTTACTGAAAAACAAGTGGTCACTCCAACAGCATCTGTATACACTGGGGTTGATTTCTGCAAAAAACTATGTGGGGTATCCATCGTTCGAAGTGGTGAAAGCATGGAAAACGCGTTGCGTGCATGTTGCAAAGGGATAAAAATCGGGAAGATTCTGATTCACCGTGAGGGAGATAACGGGAAGCAGCTGATATACGAGAAATTACCCAATGATATATCGGAGCGACATGTCCTACTCCTAGACCCCGTTCTCGCTACCGGTAACTCAGCTAACCAAGCAATTGACCTACTCATACAGAAGGGAGTTCCAGAATCACACATCATATTCCTCAACTTGATATCTGCCCCGGAGGGAATTCACTGTGTTTGCAAACGATACCCGTTCTTGAAAATTGTCACTTCCGAGATCGACGATGGATTGAACGAAGAGTATCGTGTCGTACCAGGTATGGGTGAATTTGGCGATCGTTACTTTGGAACCGATGATTAG 1449 45.41 MPEETTSIDYVMEAASGPHFSGLRLDGLISSPPSSSTSSPAHRSSLSASSAQVDANSPKQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTAEELERVHEYNFDHPDSFDTEQLLDCVEKLKSGQSYHVPIYDFKTHQRCVDSFRQVNASDVIIVEGILVFHDQRVRNLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFILPSKKYADVIIPRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPNVTVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTASVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHREGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIDLLIQKGVPESHIIFLNLISAPEGIHCVCKRYPFLKIVTSEIDDGLNEEYRVVPGMGEFGDRYFGTDD 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10871405 10876129 - Carg15569-RA Car11g01317 157270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01317 482 CDD UMPK 63 261 IPR000764 -
Car11g01317 482 MobiDBLite consensus disorder prediction 23 53 - -
Car11g01317 482 SUPERFAMILY PRTase-like 264 481 IPR029057 -
Car11g01317 482 TIGRFAM udk: uridine kinase 60 261 IPR000764 -
Car11g01317 482 Pfam Uracil phosphoribosyltransferase 279 480 - -
Car11g01317 482 PANTHER URIDINE KINASE 16 479 - -
Car11g01317 482 PRINTS Uridine kinase signature 61 78 - -
Car11g01317 482 PRINTS Uridine kinase signature 91 102 - -
Car11g01317 482 PRINTS Uridine kinase signature 136 151 - -
Car11g01317 482 PRINTS Uridine kinase signature 193 203 - -
Car11g01317 482 PRINTS Uridine kinase signature 207 218 - -
Car11g01317 482 PRINTS Uridine kinase signature 229 242 - -
Car11g01317 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 254 IPR027417 -
Car11g01317 482 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 16 479 IPR029930 GO:0004849|GO:0044206
Car11g01317 482 Pfam Phosphoribulokinase / Uridine kinase family 63 249 IPR006083 GO:0005524|GO:0016301
Car11g01317 482 Gene3D - 265 480 IPR029057 -
Car11g01317 482 CDD PRTases_typeI 338 453 IPR000836 -
Car11g01317 482 Gene3D - 57 264 IPR027417 -
Car11g01317 482 MobiDBLite consensus disorder prediction 28 53 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01317 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - csv:101207261 890.567
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00358 Car-Chr1:2021946 Car11g01317 Car-Chr11:10871405 6.94E-130 dispersed
Car01g00359 Car-Chr1:2025461 Car11g01317 Car-Chr11:10871405 0 dispersed
Car02g00664 Car-Chr2:4968796 Car11g01317 Car-Chr11:10871405 1.38E-09 dispersed
Car03g00353 Car-Chr3:4444640 Car11g01317 Car-Chr11:10871405 3.82E-17 dispersed
Car10g00252 Car-Chr10:1203278 Car11g01317 Car-Chr11:10871405 7.48E-12 dispersed
Car11g00218 Car-Chr11:1245478 Car11g01317 Car-Chr11:10871405 9.71E-17 dispersed
Car11g01317 Car-Chr11:10871405 Car18g00993 Car-Chr18:10403063 4.75E-17 dispersed
Car11g01317 Car-Chr11:10871405 Car09g00940 Car-Chr9:5787128 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1190 . . . . . . . . . Cmo11g01624 . . Car11g01317 . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00329 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car12g00327 CCT,ECH 33 188 PRT Gene Family AT1G80050 79.5 8.7e-66 246.9
Car05g00320 CCT,ECH 33 189 PRT Gene Family AT1G80050 79.0 1.1e-65 246.5
Car06g00686 . 30 180 PRT Gene Family AT1G80050 76.2 1.5e-62 236.1
Car16g01011 . 30 180 PRT Gene Family AT1G80050 73.5 1.7e-61 232.6
Car05g00126 CCT 30 179 PRT Gene Family AT1G80050 70.7 6.2e-56 214.2
Car12g00538 CCT 103 252 PRT Gene Family AT1G80050 68.7 1.5e-54 209.5
Car12g00327 CCT,ECH 1 148 PRT Gene Family AT5G11160 81.8 1.7e-64 242.7
Car05g00320 CCT,ECH 1 148 PRT Gene Family AT5G11160 81.1 1.9e-63 239.2
Car05g00126 CCT 8 145 PRT Gene Family AT5G11160 71.7 1.8e-53 206.1
Car12g00538 CCT 81 218 PRT Gene Family AT5G11160 71.0 3.0e-53 205.3
Car06g00686 . 8 145 PRT Gene Family AT5G11160 71.7 7.5e-52 200.7
Car16g01011 . 8 145 PRT Gene Family AT5G11160 70.3 8.2e-51 197.2
Car12g00538 CCT 74 256 PRT Gene Family AT1G27450 82.5 9.9e-82 300.1
Car05g00126 CCT 1 183 PRT Gene Family AT1G27450 82.0 1.4e-80 296.2
Car16g01011 . 7 180 PRT Gene Family AT1G27450 71.8 5.1e-70 261.2
Car06g00686 . 7 180 PRT Gene Family AT1G27450 71.8 2.5e-69 258.8
Car12g00327 CCT,ECH 11 183 PRT Gene Family AT1G27450 69.4 1.5e-66 249.6
Car05g00320 CCT,ECH 11 183 PRT Gene Family AT1G27450 69.4 2.0e-66 249.2
Car02g00225 CST 70 556 PRT Gene Family AT2G16570 83.2 2.7e-239 825.1
Car20g00687 CST 5 247 PRT Gene Family AT2G16570 83.6 4.2e-115 412.5
Car20g00686 . 79 284 PRT Gene Family AT2G16570 87.4 6.3e-103 372.1
Car02g00225 CST 72 556 PRT Gene Family AT4G34740 85.0 1.1e-243 839.7
Car20g00687 CST 1 247 PRT Gene Family AT4G34740 83.4 9.0e-118 421.4
Car20g00686 . 79 284 PRT Gene Family AT4G34740 88.9 5.3e-102 369.0
Car02g00225 CST 69 529 PRT Gene Family AT4G38880 73.0 1.9e-194 676.0
Car20g00686 . 57 284 PRT Gene Family AT4G38880 71.7 1.2e-90 331.3
Car20g00687 CST 1 220 PRT Gene Family AT4G38880 75.1 3.4e-90 329.7
Car12g00538 CCT 74 256 PRT Gene Family AT1G27450 82.5 9.9e-82 300.1
Car05g00126 CCT 1 183 PRT Gene Family AT1G27450 82.0 1.4e-80 296.2
Car16g01011 . 7 180 PRT Gene Family AT1G27450 71.8 5.1e-70 261.2
Car06g00686 . 7 180 PRT Gene Family AT1G27450 71.8 2.5e-69 258.8
Car12g00327 CCT,ECH 11 183 PRT Gene Family AT1G27450 69.4 1.5e-66 249.6
Car05g00320 CCT,ECH 11 183 PRT Gene Family AT1G27450 69.4 2.0e-66 249.2
Car12g00327 CCT,ECH 33 188 PRT Gene Family AT1G80050 79.5 8.7e-66 246.9
Car05g00320 CCT,ECH 33 189 PRT Gene Family AT1G80050 79.0 1.1e-65 246.5
Car06g00686 . 30 180 PRT Gene Family AT1G80050 76.2 1.5e-62 236.1
Car16g01011 . 30 180 PRT Gene Family AT1G80050 73.5 1.7e-61 232.6
Car05g00126 CCT 30 179 PRT Gene Family AT1G80050 70.7 6.2e-56 214.2
Car12g00538 CCT 103 252 PRT Gene Family AT1G80050 68.7 1.5e-54 209.5
Car16g01011 . 6 97 PRT Gene Family AT4G22570 87.0 5.2e-43 170.6
Car06g00686 . 5 104 PRT Gene Family AT4G22570 78.0 5.8e-42 167.2
Car05g00126 CCT 5 97 PRT Gene Family AT4G22570 80.6 3.5e-39 157.9
Car12g00538 CCT 80 170 PRT Gene Family AT4G22570 81.3 1.3e-38 156.0
Car05g00320 CCT,ECH 11 100 PRT Gene Family AT4G22570 78.9 2.5e-37 151.8
Car12g00327 CCT,ECH 11 100 PRT Gene Family AT4G22570 78.9 2.5e-37 151.8
Car06g00686 . 1 96 PRT Gene Family AT4G12440 81.3 1.1e-39 159.5
Car16g01011 . 1 96 PRT Gene Family AT4G12440 81.3 2.5e-39 158.3
Car12g00538 CCT 74 169 PRT Gene Family AT4G12440 78.1 1.8e-37 152.1
Car05g00126 CCT 1 96 PRT Gene Family AT4G12440 78.1 3.0e-37 151.4
Car05g00320 CCT,ECH 4 99 PRT Gene Family AT4G12440 78.1 3.9e-37 151.0
Car12g00327 CCT,ECH 4 99 PRT Gene Family AT4G12440 78.1 3.9e-37 151.0
Car12g00327 CCT,ECH 1 148 PRT Gene Family AT5G11160 81.8 1.7e-64 242.7
Car05g00320 CCT,ECH 1 148 PRT Gene Family AT5G11160 81.1 1.9e-63 239.2
Car05g00126 CCT 8 145 PRT Gene Family AT5G11160 71.7 1.8e-53 206.1
Car12g00538 CCT 81 218 PRT Gene Family AT5G11160 71.0 3.0e-53 205.3
Car06g00686 . 8 145 PRT Gene Family AT5G11160 71.7 7.5e-52 200.7
Car16g01011 . 8 145 PRT Gene Family AT5G11160 70.3 8.2e-51 197.2
Car04g02379 . 1 170 PRT Gene Family AT1G71750 58.9 2.8e-58 222.2
Car09g00940 . 16 474 PRT Gene Family AT1G55810 83.7 3.5e-221 764.6
Car11g01317 . 19 482 PRT Gene Family AT1G55810 75.1 3.6e-202 701.4
Car01g00359 . 19 288 PRT Gene Family AT1G55810 65.6 1.3e-98 357.5
Car01g00358 . 2 190 PRT Gene Family AT1G55810 83.1 6.6e-87 318.5
Car09g00940 . 71 473 PRT Gene Family AT3G27440 76.9 2.4e-184 642.1
Car11g01317 . 80 482 PRT Gene Family AT3G27440 75.4 9.5e-181 630.2
Car01g00358 . 2 190 PRT Gene Family AT3G27440 79.9 6.8e-86 315.1
Car01g00359 . 80 288 PRT Gene Family AT3G27440 68.7 4.3e-80 295.8
Car11g01317 . 1 482 PRT Gene Family AT3G27190 86.5 9.4e-249 856.3
Car09g00940 . 3 473 PRT Gene Family AT3G27190 71.4 5.6e-201 697.6
Car01g00359 . 1 288 PRT Gene Family AT3G27190 80.4 2.7e-131 466.1
Car01g00358 . 2 190 PRT Gene Family AT3G27190 91.5 4.7e-99 359.0
Car03g00353 . 4 290 PRT Gene Family AT3G53900 66.2 3.8e-107 385.2
Car09g00940 . 1 474 PRT Gene Family AT4G26510 81.7 3.4e-227 784.6
Car11g01317 . 7 482 PRT Gene Family AT4G26510 76.1 1.1e-212 736.5
Car01g00359 . 11 288 PRT Gene Family AT4G26510 67.1 1.1e-103 374.4
Car01g00358 . 2 190 PRT Gene Family AT4G26510 84.1 2.4e-92 336.7
Car11g01317 . 1 482 PRT Gene Family AT5G40870 86.5 7.3e-249 856.7
Car09g00940 . 44 476 PRT Gene Family AT5G40870 77.4 7.4e-201 697.2
Car01g00359 . 1 288 PRT Gene Family AT5G40870 80.8 8.0e-131 464.5
Car01g00358 . 2 190 PRT Gene Family AT5G40870 92.1 1.3e-99 360.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g01317 Car_Chr11 FPKM 17.797741 19.426104 15.15989 16.104311 11.479903 10.964718 11.872271 17.074806 15.109117 16.254868