Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car11g01357 | ATGTCTTCTTCCACCTACTCCAATTCTCCTTGTGCAGCCTGCAAGTTCCTACGTCGAAAATGTCTCCCGAACTGCGTTTTCGCGCCGTATTTCCCGTCGGAGGAGCCACAAAAGTTCGCCAATGTTCACAAGATCTTCGGAGCTAGCAATGTCAGCAAACTACTAAACGAGGTCCAGCCACACCAACGAGAGGATGCCGTGAACTCGCTCGCTTACGAGGCCGAGGCGAGGATGAAAGACCCCGTCTACGGCTGCGTCGGCGCCATCTCGATCCTCCAAAGACAAGTCATCAAGCTTCAAAGAGAACTCGATGCTACCAACGCTAACCTCATTCGCTACGCCTGCAGTGAACTCCCCGCCCCGTCGTCATCGTCGTCGCAATATGCTCGGAGATCGTCATCGACAAGCCACGTCGGAAGCTCGTCGACCTCTAGCTATGGCCATTACTATTCTGGCCTCTACTTTTGTGGCCCTTGTGGAGATGACCATGACAAAGGAGAAGAACACAAGTAA | 513 | 53.02 | MSSSTYSNSPCAACKFLRRKCLPNCVFAPYFPSEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQRELDATNANLIRYACSELPAPSSSSSQYARRSSSTSHVGSSSTSSYGHYYSGLYFCGPCGDDHDKGEEHK | 170 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 11112461 | 11112973 | + | Carg15610-RA | Car11g01357 | 157310 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car11g01357 | 170 | Coils | Coil | 89 | 109 | - | - | |
| Car11g01357 | 170 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 106 | IPR004883 | - | |
| Car11g01357 | 170 | ProSiteProfiles | LOB domain profile. | 9 | 110 | IPR004883 | - | |
| Car11g01357 | 170 | MobiDBLite | consensus disorder prediction | 119 | 143 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car04g02589 | Car11g01357 | CCT | |
| Car04g02589 | Car11g01357 | ECH | |
| Car11g01357 | Car14g00607 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g02784 | Car-Chr4:21330378 | Car11g01357 | Car-Chr11:11112461 | 1.58E-50 | dispersed | |
| Car10g00093 | Car-Chr10:418205 | Car11g01357 | Car-Chr11:11112461 | 1.13E-69 | dispersed | |
| Car11g01357 | Car-Chr11:11112461 | Car13g00709 | Car-Chr13:8335544 | 1.28E-61 | dispersed | |
| Car19g00864 | Car-Chr19:8993376 | Car11g01357 | Car-Chr11:11112461 | 1.60E-46 | dispersed | |
| Car11g00069 | Car-Chr11:374319 | Car11g01357 | Car-Chr11:11112461 | 1.72E-69 | wgd | |
| Car11g01357 | Car-Chr11:11112461 | Car14g00607 | Car-Chr14:3379792 | 6.00E-94 | wgd | |
| Car11g01357 | Car-Chr11:11112461 | Car18g00177 | Car-Chr18:974033 | 1.11E-60 | wgd | |
| Car11g01357 | Car-Chr11:11112461 | Car04g02589 | Car-Chr4:20334234 | 4.06E-69 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4332 | PF03195 | LOB | 2.30E-42 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car11g01357 | - | - | cpep:111792844 | 313.538 |