Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01382 ATGGAATCCGGCCGGTTCTTGTTCAATCCCCCTGCTTGCGGCGGCAACATGCTTTGCCTTGGCGGAGCCGGTGGTAGCGATCGTTTTCTGCGAGAAGGAAGAACAATGATGAGCATGAGCATGAACATGAGCATGCAAGAGAGTCCAAAGGGGAGACCATTTTTCAGATCCCCTGATGATCTTTACGACGATGAATATTACGACGAGCTTTACCCCGAGAAGAAGCGCCGCTTGGCCAACGAGCAGGTTCAAATGCTGGAGAAGAGTTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAGTCCCAACTAGCCAAGAAGCTGGGGCTGCAGCCAAGGCAGGTGGCTGTGTGGTTCCAGAACCGCCGTGCCCGGTGGAAGACGAAGCAGCTCGAAAGGGACTATGATGTTCTTAAAGCTTCATATGATTTGCTTATGTCAAACTATGACTCCATTGTCAAAGAGAATGCAGTGCTTAAATCTGAGGTGGCTTCCTTGACTGAGAAATGTGTAGCTAAAGAGCTTGATGGAGGAGAAGCACCAATTCCACGAACGACTTCGGAGCCTCTTCTAGCAGACACTGCCCATGTCTCCGCCCCACACTCCGGTGGCTCCGGGAGAAAGGCTGAAGATCGTCTCAGTTCAGGGAGCGATAGCAGTGCAGTGATTGACGATAATTGTCTACAACTCATCGACAGCGGCGATTCTTACTTCCCGAGTAACGAGTATCCACAACGTGCACCTCTACCTCCTGGGCTGCAAATGGAACATGATGACAGGAATGATAATAGCAATTACTTGTTCTCAGATATGTTTGCAGAAACAAACCAACAGAACCAGGAGGGAGGGCCTCCAGCTTGGTGGGCGTGGCCTTAG 876 50.68 MESGRFLFNPPACGGNMLCLGGAGGSDRFLREGRTMMSMSMNMSMQESPKGRPFFRSPDDLYDDEYYDELYPEKKRRLANEQVQMLEKSFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDLLMSNYDSIVKENAVLKSEVASLTEKCVAKELDGGEAPIPRTTSEPLLADTAHVSAPHSGGSGRKAEDRLSSGSDSSAVIDDNCLQLIDSGDSYFPSNEYPQRAPLPPGLQMEHDDRNDNSNYLFSDMFAETNQQNQEGGPPAWWAWP 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11285730 11288687 + Carg15636-RA Car11g01382 157335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01382 291 Pfam Homeodomain 74 127 IPR001356 GO:0003677
Car11g01382 291 MobiDBLite consensus disorder prediction 196 220 - -
Car11g01382 291 ProSiteProfiles 'Homeobox' domain profile. 69 129 IPR001356 GO:0003677
Car11g01382 291 MobiDBLite consensus disorder prediction 272 291 - -
Car11g01382 291 Pfam Homeobox associated leucine zipper 129 169 IPR003106 GO:0006355|GO:0043565
Car11g01382 291 MobiDBLite consensus disorder prediction 238 266 - -
Car11g01382 291 ProSitePatterns 'Homeobox' domain signature. 104 127 IPR017970 GO:0000981|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g02619 Car11g01382 CCT
Car11g01382 Car15g00313 CCT
Car11g01382 Car14g00587 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01382 Car-Chr11:11285730 Car13g00767 Car-Chr13:8605745 8.83E-42 dispersed
Car11g01382 Car-Chr11:11285730 Car14g00587 Car-Chr14:3198557 1.17E-156 wgd
Car11g01382 Car-Chr11:11285730 Car15g00313 Car-Chr15:1688606 1.27E-76 wgd
Car11g01382 Car-Chr11:11285730 Car04g02619 Car-Chr4:20454193 2.72E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4334 PF00046 Homeodomain 2.00E-17 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01382 K09338 - csv:101212142 448.743