Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car11g01382 | ATGGAATCCGGCCGGTTCTTGTTCAATCCCCCTGCTTGCGGCGGCAACATGCTTTGCCTTGGCGGAGCCGGTGGTAGCGATCGTTTTCTGCGAGAAGGAAGAACAATGATGAGCATGAGCATGAACATGAGCATGCAAGAGAGTCCAAAGGGGAGACCATTTTTCAGATCCCCTGATGATCTTTACGACGATGAATATTACGACGAGCTTTACCCCGAGAAGAAGCGCCGCTTGGCCAACGAGCAGGTTCAAATGCTGGAGAAGAGTTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAGTCCCAACTAGCCAAGAAGCTGGGGCTGCAGCCAAGGCAGGTGGCTGTGTGGTTCCAGAACCGCCGTGCCCGGTGGAAGACGAAGCAGCTCGAAAGGGACTATGATGTTCTTAAAGCTTCATATGATTTGCTTATGTCAAACTATGACTCCATTGTCAAAGAGAATGCAGTGCTTAAATCTGAGGTGGCTTCCTTGACTGAGAAATGTGTAGCTAAAGAGCTTGATGGAGGAGAAGCACCAATTCCACGAACGACTTCGGAGCCTCTTCTAGCAGACACTGCCCATGTCTCCGCCCCACACTCCGGTGGCTCCGGGAGAAAGGCTGAAGATCGTCTCAGTTCAGGGAGCGATAGCAGTGCAGTGATTGACGATAATTGTCTACAACTCATCGACAGCGGCGATTCTTACTTCCCGAGTAACGAGTATCCACAACGTGCACCTCTACCTCCTGGGCTGCAAATGGAACATGATGACAGGAATGATAATAGCAATTACTTGTTCTCAGATATGTTTGCAGAAACAAACCAACAGAACCAGGAGGGAGGGCCTCCAGCTTGGTGGGCGTGGCCTTAG | 876 | 50.68 | MESGRFLFNPPACGGNMLCLGGAGGSDRFLREGRTMMSMSMNMSMQESPKGRPFFRSPDDLYDDEYYDELYPEKKRRLANEQVQMLEKSFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDLLMSNYDSIVKENAVLKSEVASLTEKCVAKELDGGEAPIPRTTSEPLLADTAHVSAPHSGGSGRKAEDRLSSGSDSSAVIDDNCLQLIDSGDSYFPSNEYPQRAPLPPGLQMEHDDRNDNSNYLFSDMFAETNQQNQEGGPPAWWAWP | 291 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 11285730 | 11288687 | + | Carg15636-RA | Car11g01382 | 157335 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car11g01382 | 291 | Pfam | Homeodomain | 74 | 127 | IPR001356 | GO:0003677 | |
Car11g01382 | 291 | MobiDBLite | consensus disorder prediction | 196 | 220 | - | - | |
Car11g01382 | 291 | ProSiteProfiles | 'Homeobox' domain profile. | 69 | 129 | IPR001356 | GO:0003677 | |
Car11g01382 | 291 | MobiDBLite | consensus disorder prediction | 272 | 291 | - | - | |
Car11g01382 | 291 | Pfam | Homeobox associated leucine zipper | 129 | 169 | IPR003106 | GO:0006355|GO:0043565 | |
Car11g01382 | 291 | MobiDBLite | consensus disorder prediction | 238 | 266 | - | - | |
Car11g01382 | 291 | ProSitePatterns | 'Homeobox' domain signature. | 104 | 127 | IPR017970 | GO:0000981|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car04g02619 | Car11g01382 | CCT | |
Car11g01382 | Car15g00313 | CCT | |
Car11g01382 | Car14g00587 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car11g01382 | Car-Chr11:11285730 | Car13g00767 | Car-Chr13:8605745 | 8.83E-42 | dispersed | |
Car11g01382 | Car-Chr11:11285730 | Car14g00587 | Car-Chr14:3198557 | 1.17E-156 | wgd | |
Car11g01382 | Car-Chr11:11285730 | Car15g00313 | Car-Chr15:1688606 | 1.27E-76 | wgd | |
Car11g01382 | Car-Chr11:11285730 | Car04g02619 | Car-Chr4:20454193 | 2.72E-76 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
4334 | PF00046 | Homeodomain | 2.00E-17 | CL0123 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car11g01382 | K09338 | - | csv:101212142 | 448.743 |