Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01386 ATGCCCAATTTGGTGATGATTCGCCGGAGAATTTGGTCAACCAAGACCTTTCACACAGCTGCTTTAACAATCTTCAATGCTCAGCGGTATGTTCGCCGTCGTCCAACTACATTCAACATTTCTTTTCAGTTGAAACAGAGCTGTTTCTCTTCTTTTCCAGCTCCGGAATTCTATTCCCTGAACAAGAAGATGTCTTATTTGATTCGAACAGGTCAAATAATTGAAGCGAGAGAATTGTTTGATAGCATTAAGCATCGGAATACGATCACTTGGAATACGATGATCACTGGGTATGTGAAAAGAAGAGAGATGACAAAAGCACGACAGTTGTTCGATGAAATGCCTCACAGAGACATTGTGTCATGGAACTTGATGTTATCAGGTTATATATCTTGTGGTGGAAGGTACATTGAGAGTGGACGAAACCTATTTGATAAAATGCCACAAAGAGATTGTGTTTCGTGGAACACAATGGTTAGTGGGTATGCCAAGAATGGAATGATGGAAGAAGCAGAAGAGCTTTTCAAGTACATGCCTGAGCGTAATGTTGTCTCATGGAATGCCATGGTTTCTGGTTATTTAATGAATGGTTATGTGGAGAAAGCTATTGAGTTCTTCAAGATGATGCCCGAACGAGACTCCGCTTCTCTTAGTGCATTGGTTTCTGGTCTGATTCAGAATGAGAAACTGGTTGAAGCTGAAAGGATTTTGCTTCAATATGGTGGGAGTGATGGTAGAGGGAATTTAGTTCATGCTTATAACACTTTAATTGCTGGATATGGTCAGAAAGGAATGATCCAAGAAGCCCGAAAACTGTTCGATTGCATCCCTAATCGACAGGAAGACGAAAATGGAAGCTTTGGGAAGAATGTGGTATCATGGAACTCTATGATTATGAGCTATGTGAGAGCTGGTGACATAGTCTCTGCTCGAGAACTCTTCGACAAAATGGTCGAGCGAGATACTTTTTCATGGAACACTATGATCAGTGGCTACATTCAGATCTTGGATATGAAAGAGGCCTCGAATCTGTTCGGTAGAATGTCGAATCCCGATACCCTTTCTTGGAATATGATGATTTCGGGGTTCGCTGAGATAGGTAATTTGAAACTAGCTCATGATTTGTTCATTAGGATGCCAGAGAAAAGCCTTGTCTCATGGAATTCCATGATATCTGGGTATGAGAAAAATGAAGATTATAAAGGAGCCATTAACATCTTTTTGCAGATGCAATTTGAGGGTAAGAAACCAGATAGACATACTTTATCATCAATTATCAGTGCTTGTGCTGGTTTGGTTGATCTGGCCTTAGGAACTCAGATTCATCAGTTGATTACAAAAGCATTTATTGCAGATTTGCCTATAAACAACTCTCTTGTTACCATGTACTCGAGATGTGGAGCAATCGTCGAGGCACGAACCGTTTTCGACGAAATGAATCTTCAGAGAGATGTCATATCTTGGAACGCGATGATCGGCGCGTATGCCTCTCATGGCTTTGCAACAGAGGCTCTTCAACTTTTTGACTTGATGAAGCAATGTAATGTGCAGCCTTCTTATATCACATTCATTTCTGTTCTGAATGCTTGTGCTCATGTTGGATTGATTGAGGAAGGTAGGAGGGAGTTCAACTCCATGGTTAGCGCTCACGGTATCGAACCACGAGTTGAACACTATGCTGTCCTTGTCGATATCATCGGTCGACACGGGCAGCTTGAAGAAGCAATGAGTTTGATCAATAACATGCCTTGTAAACCAGATAAAGCGGTGTGGGGTGCTTTACTTGGTGCTTGTAGGGTGCACAACAATGTTGAAATGGCTCGTGTCGCGGCTGAAGCCTTGATGAAACTCGAACCACAAAGCGCAGCTCCTTACGTGCTGCTATATAACATGTATGCTGATGTGGGACGATGGAATGATGCTGCTGAAGTGAGAACGAGGATGGAGAAGAATAATATTCAAAAGGAAACCGGAGACAACCAAAGCTACGACCCTCAGGAGGCGTCATTGAGCTACATATGGGCCAATATAGAAGAATGTCATGATGCGGCTCTGCGCGCTTACCCGCGATATTTTGATTCTCAAGCTGTCCTACGGAGGCTTCTCCTCTGCGATTCGCTTCTCTCCGCTCCAGCTTTCGATTCCCTGGCTATGGAGTCTCTGATCAACGCTTCTTCTGCAGCGATTGTCTCTTCTTCTTCCTCTTTTCCTATATCTTCTCCCAATAGGATGCTTCCTCTGAGATCTTTTCAAGTTCCGCACGCCTCCAAAGGCAACGAGAACGAATCTGATCGTCAGTCTGACTCGAAGAATATCAGGAACCTTCCAATCCTCAGTAAACATCATCTCTCCCTTTCCCCTCTTTCAAAGGATATTGCAATGGAAGTGGTGCTTAGTGCAGCCACGGGAAGAGGGTGGACGACAGGGTCTGGTATGGAAGGCCCCTCATCTCCGGCTGGGCTGGAGGCCAAATGA 2475 43.72 MPNLVMIRRRIWSTKTFHTAALTIFNAQRYVRRRPTTFNISFQLKQSCFSSFPAPEFYSLNKKMSYLIRTGQIIEARELFDSIKHRNTITWNTMITGYVKRREMTKARQLFDEMPHRDIVSWNLMLSGYISCGGRYIESGRNLFDKMPQRDCVSWNTMVSGYAKNGMMEEAEELFKYMPERNVVSWNAMVSGYLMNGYVEKAIEFFKMMPERDSASLSALVSGLIQNEKLVEAERILLQYGGSDGRGNLVHAYNTLIAGYGQKGMIQEARKLFDCIPNRQEDENGSFGKNVVSWNSMIMSYVRAGDIVSARELFDKMVERDTFSWNTMISGYIQILDMKEASNLFGRMSNPDTLSWNMMISGFAEIGNLKLAHDLFIRMPEKSLVSWNSMISGYEKNEDYKGAINIFLQMQFEGKKPDRHTLSSIISACAGLVDLALGTQIHQLITKAFIADLPINNSLVTMYSRCGAIVEARTVFDEMNLQRDVISWNAMIGAYASHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHVGLIEEGRREFNSMVSAHGIEPRVEHYAVLVDIIGRHGQLEEAMSLINNMPCKPDKAVWGALLGACRVHNNVEMARVAAEALMKLEPQSAAPYVLLYNMYADVGRWNDAAEVRTRMEKNNIQKETGDNQSYDPQEASLSYIWANIEECHDAALRAYPRYFDSQAVLRRLLLCDSLLSAPAFDSLAMESLINASSAAIVSSSSSFPISSPNRMLPLRSFQVPHASKGNENESDRQSDSKNIRNLPILSKHHLSLSPLSKDIAMEVVLSAATGRGWTTGSGMEGPSSPAGLEAK 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11333029 11336935 - Carg26375-RA Car11g01386 157339

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01386 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 324 IPR002885 -
Car11g01386 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Car11g01386 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 87 121 IPR002885 -
Car11g01386 824 Pfam PPR repeat 355 382 IPR002885 -
Car11g01386 824 Pfam PPR repeat 184 212 IPR002885 -
Car11g01386 824 Pfam PPR repeat 559 583 IPR002885 -
Car11g01386 824 Pfam PPR repeat 153 183 IPR002885 -
Car11g01386 824 Pfam PPR repeat 323 348 IPR002885 -
Car11g01386 824 Pfam PPR repeat 457 479 IPR002885 -
Car11g01386 824 Pfam PPR repeat 252 276 IPR002885 -
Car11g01386 824 Pfam PPR repeat 292 320 IPR002885 -
Car11g01386 824 MobiDBLite consensus disorder prediction 753 773 - -
Car11g01386 824 Pfam PPR repeat family 86 118 IPR002885 -
Car11g01386 824 Pfam PPR repeat family 383 430 IPR002885 -
Car11g01386 824 Pfam PPR repeat family 483 531 IPR002885 -
Car11g01386 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 484 518 IPR002885 -
Car11g01386 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
Car11g01386 824 MobiDBLite consensus disorder prediction 804 824 - -
Car11g01386 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 382 IPR002885 -
Car11g01386 824 Pfam E motif 601 658 IPR046848 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01386 - - - bhj:120077123 1153.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01386 Car-Chr11:11333029 Car07g01089 Car-Chr7:6477773 2.75E-10 dispersed
Car19g00590 Car-Chr19:7295777 Car11g01386 Car-Chr11:11333029 2.04E-44 dispersed
Car11g01386 Car-Chr11:11333029 Car08g00515 Car-Chr8:3257381 2.94E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g213 . . . . . . . . . Cmo11g01756 . . . . . . . Bhi05g01672 . . . Hepe02g0402 . . Cla02g00403 . . . . . . . Cone8ag1304 . . . Csa07g00127 . . . . . . Bpe15g00799 . Bma03g00618 . . . . Cma11g01362 . Car11g01386 . . . . . . . . . . . . . . . . . Lsi11g01222 . Chy01g00656 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014695 0 1 0 1 1 0 1 1 0 1 0 0 1 0 1 1 0 1 0 0 1 1 1 1 0 1 1 1 1 1 19
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g01386 Car_Chr11 FPKM 41.765484 46.804062 30.378225 27.832251 45.774239 55.261581 39.814331 18.695856 19.44772 19.408276