Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01388 ATGGATTCCTTCAAGAAATCTCTCAAACCCAATGGACCTTTCAAGCATTCCAGGAAGATTTCTGCCGGCGGAGCTGGAAGTGAAATCAATCAGGAGGAGCTCCCCATTCTTCTCGATCACCAACCTTCTGATCAGCATAATCGCCCTAAGGTTCGTCGACCAGCCAACGACGGCGAACCTTCTGGACACAGTGAGGTGATTCTCAAGGTTGATGATGGCGGTTCTTCGGCTGTCTCAAGATCGCAGGAGTCTGCCGGCTATGGCGGGAAGGTTTGGCGGGAATCTAGGTATGATTTCTGGAGTAATAATGATGGAATTGGAACTGGAGGAAGTGCGAGTTGGGCTAGTGGTGCGAGAGCGAGTGATAGTGGTGATAGAAATGAGGGATTTGAATTTGTGAGGCGTGGGAATGGTACGGATGATCCGCCGACGAAGCTGATTGGTGATTTTCTTCATAAGCAGAAAGTTAGAGGCGAAACGACTTTGGATTTGGATCTGGAAATGGAGGAGTTGCGGCTTGATAGGACTAAAACTCCGATGATGGACTCGCCGTTGAGTCGGGCTTCGAAGGATCTTAAAGTTTCGTTTCAACATGACTCGACTGAAATATCGAGCAATGAATCGGTTCGACGGCGGTATAAAGAGTTCCGTGAAATGCAAGAAGAGAGCAAAAGAGGTCAGCCGTCATGGCATCAATCGCACCATGAACATGGCGGATCTTCCATCTCTGGTGTTCAGAACGACTCTGTTGCTGAAGCTATGAGAAGCGCATCTAACTTGTCTTTTCAGAGCACTCTTTCGTTGCATAGGAAATCTCATTTGCTGAAGGCTAAAGGCAAGTCGAGATTGACAGATCCGCCGGCAGAACCAGACCGGCTCTCCGGCCTCGTTAATAAATCGGGACAGCTCCGATCAGGGTTTCTCGGCAGGACTGACGATGAGGAGGACGACCCTTTTCTGGAGGAGGATTTTCCAGACGATTTCAGAAGGGGTAAGCTCGATGCTCTAACTGTGCTTCAATGGATCAGTTTGTTTCTAATCACTGCTGCTTTAGTTTGCACACTTTCTATTCGTCATTTGAGAGAAAATAGCTTATGGGAATTTAGTATATGGAAATGGGAGGTGATGGTTTTGGTACTGATTTGTGGGCGATTGGTATCTGGTTGGGGGATTGGAATTGGAGTATTTTTCATTGAGAGGAATTTTCTTTTGCGTAAGAAGGTTCTGTATTTCGTTTATGGGGTTAAGAGGCCAGTGCAGAATTGTCTATGGTTAGGCCTTGTTCTAATCGCTTGGCATTTGTTGTTTGATAAGCGAGTTAAGAATCAAACCAACAGCGATATACTCGATTATGTGAGGAAAAGTTTAGTGTGTCTCTTGTTAGGCACATTGATTTGGCTAGCTAAGACCCTGATGCTGAAGGTGCTTGCATCTTCCTTCCATGTGAGCACATACTTCGATCGAATTCAGGAATCGTTGTTTAACCAATATGTAATCGAGACGCTTTCCGGGCCACCGCGGATTGAGCTTCAGAAGAGTGAGGAAGAACAGAAGAAAATTGCAGATGAAGTTCAAAGATTACAGAATGCAGGAGTTCCCGTACCCCCAGATCTAAGGGCAGCAGCTTTATCTTCTATAAAGAGTGGTGAAAGGGTAAGAAGCAATGTGGGGAGCCAGAGAAGTTTGCGTGGAAAAGATCCCAAACTCTCAAGGGTATCTACCAAAAATGGAAGTGAAGGGATAAATATTGACCACTTGCACAAGCTAACTTCGAAGAATGTATCTGCTTGGAACATGAAGAGGTTGCTGAAAATAGTTAGATATGGAAGTATTACCACGCTGGATGAGCAGATACAGGGGCCGTCTCTTGATGATGAATCTACTACTACCGAGATCAAAAGTGAACGCGAGGCAAAGGCTGCTGCTAAGAAGATTTTTCAGAACGTGGCTCGGCCCGGGTTCAATCGCTTTGAGGGAGCAACTGAGACCCGGAGGATAAGCAAGTCTGCCTTGAAAAATTGGGTGGTCAATGCCTTCAGAGAACGTAGAGCCCTTTCTTTAACACTGAATGATACCAAAACAGCTGTTGAGAGACTTGGGCTTGTGGTGAATGTCATATTCAGCATCTTTATAGTAGTTTTATGGATTATATTACTAGGAATTGCCTCCAGAAAAGTCATCCTCTACATTAGTTCTCAAATAGTGCTTGTGGCATTCATTTTTGGGAACACTCTAAAGAACATATTTGAAGCAATCATCTTCTTGTTTGTCATGCATCCGTTCGACGTCGGAGATCGATGTGAAATCGATGATATTCAGATGGTTGTAGAGGAAATGAACATCTTGACTACTGTGTTCTTGAGACACGACAATCTGAAGATTATTGTCCCAAATAGTGTTCTTGCAACCAAAGTGATCCACAACCACTACCGTAGTCCCGACATGGGCGAATTTATTGAAATCTACAAATTGGCCATGTCAATTTGGCTGTCACACACAATGAACCACCAAGACATAAGGGAAAGATGGGCTCGGAGATCCGTCGTGGTCGAAGAGGTATTGAAGATCTGTCAAGAGTTCGACATTACACCGACTCTCGTCCCACCACCGTGA 2613 45.08 MDSFKKSLKPNGPFKHSRKISAGGAGSEINQEELPILLDHQPSDQHNRPKVRRPANDGEPSGHSEVILKVDDGGSSAVSRSQESAGYGGKVWRESRYDFWSNNDGIGTGGSASWASGARASDSGDRNEGFEFVRRGNGTDDPPTKLIGDFLHKQKVRGETTLDLDLEMEELRLDRTKTPMMDSPLSRASKDLKVSFQHDSTEISSNESVRRRYKEFREMQEESKRGQPSWHQSHHEHGGSSISGVQNDSVAEAMRSASNLSFQSTLSLHRKSHLLKAKGKSRLTDPPAEPDRLSGLVNKSGQLRSGFLGRTDDEEDDPFLEEDFPDDFRRGKLDALTVLQWISLFLITAALVCTLSIRHLRENSLWEFSIWKWEVMVLVLICGRLVSGWGIGIGVFFIERNFLLRKKVLYFVYGVKRPVQNCLWLGLVLIAWHLLFDKRVKNQTNSDILDYVRKSLVCLLLGTLIWLAKTLMLKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPRIELQKSEEEQKKIADEVQRLQNAGVPVPPDLRAAALSSIKSGERVRSNVGSQRSLRGKDPKLSRVSTKNGSEGINIDHLHKLTSKNVSAWNMKRLLKIVRYGSITTLDEQIQGPSLDDESTTTEIKSEREAKAAAKKIFQNVARPGFNRFEGATETRRISKSALKNWVVNAFRERRALSLTLNDTKTAVERLGLVVNVIFSIFIVVLWIILLGIASRKVILYISSQIVLVAFIFGNTLKNIFEAIIFLFVMHPFDVGDRCEIDDIQMVVEEMNILTTVFLRHDNLKIIVPNSVLATKVIHNHYRSPDMGEFIEIYKLAMSIWLSHTMNHQDIRERWARRSVVVEEVLKICQEFDITPTLVPPP 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11354302 11358742 - Carg26373-RA Car11g01388 157341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01388 870 MobiDBLite consensus disorder prediction 1 88 - -
Car11g01388 870 Coils Coil 510 530 - -
Car11g01388 870 MobiDBLite consensus disorder prediction 43 59 - -
Car11g01388 870 Pfam Mechanosensitive ion channel 703 812 IPR006685 GO:0016020|GO:0055085
Car11g01388 870 MobiDBLite consensus disorder prediction 196 244 - -
Car11g01388 870 MobiDBLite consensus disorder prediction 277 297 - -
Car11g01388 870 MobiDBLite consensus disorder prediction 550 577 - -
Car11g01388 870 MobiDBLite consensus disorder prediction 110 144 - -
Car11g01388 870 MobiDBLite consensus disorder prediction 204 232 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g01388 Car20g00632 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01324 Car-Chr1:11827321 Car11g01388 Car-Chr11:11354302 5.58E-57 dispersed
Car10g00675 Car-Chr10:3483489 Car11g01388 Car-Chr11:11354302 4.91E-144 dispersed
Car11g01388 Car-Chr11:11354302 Car17g00064 Car-Chr17:352837 2.17E-113 dispersed
Car09g00070 Car-Chr9:347667 Car11g01388 Car-Chr11:11354302 1.84E-165 transposed
Car11g01388 Car-Chr11:11354302 Car20g00632 Car-Chr20:3552593 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01388 K22048 - csv:101207426 1150.96