Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01407 ATGGCTCTCAATCTCCGCCAAAAGCAGACTGAAAGCATCATTCGTATGTTGAATCTGAACCAGCCTGTTACCGCTACGGGTACGGCCAACGATGAGGTTTACAAGATCCTGATCTACGACAGGTTCTGTCAAAACATTCTTTCTCCTTTGATTCATGTCAAGGACCTACGCAAACATGGCGTTACTCTTTACTTCCTTATTGACAAGGACCGTAAGCCTGTACACGATGTCCCTGCTGTTTACTTTGTTCAAGCAACTAAGCATAATATCGATCGGATCGTTGCTGATGCTTCGCGTTCTTTGTATGATAGCTTCTTTCTCAACTTCTCTTCCTCTGTCCCCCGGCCGCTGCTCGAGGATCTCGCGTCTGAAACGTTGAAATCGGATTCGATTCAGCGAATTGCGAAGGTGCATGATCAGTATTTGGAATTTGTTACTCTTGAAGATAATTTGTTTTCGTTAGGTCAGAGGTCTAGTTATGTGCAATTGAATGATCCCTCGGCAGGGGATCGTGAGATTGAAGAGATTGTGGAGAAGATTGTTGGTGGGTTGTTTTGTGTTTTGGCTACGCTTGCTGTAGTGCCGATCATTAGGTGCCCACGAGGGGGGCCTGCTGAGATGGTTGCCATGGCGTTGGATCAAAGGTTAAGGGATCACTTGTTATCGAAGAACAACTTGTTCTCTGAAGGTGGGGGGTTTATGAGCTCCTTTCAGCGCCCGATTCTGTGTTTATTTGATCGTAATTTTGAGTTGTCTGTTGGAATTCAACATGATTTTAGATACCAACCTTTGGTGCACGACATTCTTGGGCTGAAATTGAATGGGTTGAGTGTTAAGAGTGAAAAGGGTGGAATGAATTATGAGTTGAATAGTTCGGATCCATTTTGGTCGGCTAATGGATTCTTGGAATTCCCAGAAGTTGCAGTCGAGATTGAGACACAGCTGAACAAATACAAGAGGGATGTTGATGAGGTCAATAGGAAGACTGGTGGAGCTGCTGAGGTCGAGTTTGATGGAGCAGATATGATAGGTAACACTAAGCATTTGATGAAGGCAGTTAACTCGTTGCCTGAGTTGACCGAGCGGAAGCAAATCATCGACAAGCACACGAATATTGCTACTGTTTTGCTTGGTGAGATTAAGGAAAGATCCCTTGATTCATACGCGAAGAAGGTGAACGAGATAATGTCTAGAGGTGGCATTGATCGGAATGAGCTTTTGGACTTGCTTAGAGGTAAAGGCACGAAGATGGACAAGCTTCGGTTTGCTATCGTGTATCTAATCTCTTCTGAAAACATTAATCAATCGGAAGTTGAAGCCATGGAAGAGGTTCTAAAGGAGTTGGAAATTAACACTAGTGCATTTCAATATGTAAAGAAGATGAAATCATTGAACGTCTCATTTGCACCTGCAAATTCCACTGGCAAGGGAAACATTGTCAATTGGGCTGAAAAGCTATACGGACAATCAATTAGTGCTGTTACTGCTGGTGTAAAAAATCTATTATCTAGTGATAGGCAACTTGCATTAACAAGGACTGTGGAGGCTTTGATGGAGGGAAAACCAAATCCTGAAATTGACTCGTATCTCGTTCTCGATCCTCGTGCTCAAAGGTCAAGTGCTGGAACAAGCAGCAGCCATTTAAAAGGACCTTTCAAGGAAGCGATCGTATTTATGATTGGCGGGGGTAATTACATAGAGTATGCAAGTCTGCAGGAACTTTCCCTGCGTCAGCAGCCTCCCAAACATGTTGTATATGGTACAACAGAAATTCTAACTGGAGAGGAGTTTGTAGAGCAGCTTATGCTGTTGGGGCAGAAGATGGGGTTGGGCAGTGCTTCTGTATCCTCAAGTAATTAG 1860 43.76 MALNLRQKQTESIIRMLNLNQPVTATGTANDEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQATKHNIDRIVADASRSLYDSFFLNFSSSVPRPLLEDLASETLKSDSIQRIAKVHDQYLEFVTLEDNLFSLGQRSSYVQLNDPSAGDREIEEIVEKIVGGLFCVLATLAVVPIIRCPRGGPAEMVAMALDQRLRDHLLSKNNLFSEGGGFMSSFQRPILCLFDRNFELSVGIQHDFRYQPLVHDILGLKLNGLSVKSEKGGMNYELNSSDPFWSANGFLEFPEVAVEIETQLNKYKRDVDEVNRKTGGAAEVEFDGADMIGNTKHLMKAVNSLPELTERKQIIDKHTNIATVLLGEIKERSLDSYAKKVNEIMSRGGIDRNELLDLLRGKGTKMDKLRFAIVYLISSENINQSEVEAMEEVLKELEINTSAFQYVKKMKSLNVSFAPANSTGKGNIVNWAEKLYGQSISAVTAGVKNLLSSDRQLALTRTVEALMEGKPNPEIDSYLVLDPRAQRSSAGTSSSHLKGPFKEAIVFMIGGGNYIEYASLQELSLRQQPPKHVVYGTTEILTGEEFVEQLMLLGQKMGLGSASVSSSN 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11533407 11537687 - Carg18123-RA Car11g01407 157360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01407 619 Coils Coil 431 451 - -
Car11g01407 619 Pfam Sec1 family 35 600 IPR001619 GO:0016192
Car11g01407 619 Coils Coil 308 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01407 K19998 SCFD1, SLY1; sec1 family domain-containing protein 1 - csv:101216894 1105.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g01407 Car20g00621 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02340 Car-Chr4:18828990 Car11g01407 Car-Chr11:11533407 1.01E-13 dispersed
Car11g01407 Car-Chr11:11533407 Car15g01296 Car-Chr15:10116871 1.81E-15 dispersed
Car11g01407 Car-Chr11:11533407 Car02g00174 Car-Chr2:1045109 0 wgd
Car11g01407 Car-Chr11:11533407 Car20g00621 Car-Chr20:3475534 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g228 . . . . . . . . . . . Cma20g00720 . Car20g00621 . . . . . . . . . . . . . . . . . . . . . . . . . Blo04g00602 . . . . . . . Sed05g3003 . Cmo20g00718 . . Car11g01407 . Cpe16g00345 Cpe05g01342 Bhi10g01246 Tan05g1061 Cmetu10g1643 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002622 0 2 2 1 1 2 3 2 2 2 2 2 3 2 1 3 2 2 3 2 2 2 2 1 2 2 2 2 2 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g01407 Car_Chr11 FPKM 0.092409 0.0 1.461258 1.178469 1.128234 0.877033 1.439898 0.0 0.0 0.0