Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01413 ATGGGTAAGGTAGTGGAGAGGAAGAAGAGGAAGAAAGGGCGGCCATCGCTGTTGGATCTTCAAAAGCGGAATCTAAAGGAACAGCAAGAACAAGAGGATGAAGAGCAGAAGCGACAGAATCACAACAAACCCAAGCGAATCGACCGCTCCTCCGCAATTCCCAACCCTAATTACGCTTCTTCTACTCCCTTGCGGCGATCTACTCGCCGGAATCCCAACCCCGACGGACTCAGTCCCGATGACCACGACGATGCCGAATACAACCAAGAATTGGCCAGGAACCGCCGCGAGAGGAAACTCAAGCTCGTTCTCAGATTGCACTCTCAGAAACCTCCCGTCAATTCGTCCTCTCTCAATTCCGGTGGTTCCGATTCTAATGCGGAGGGGGACGATAATGTTGCGTCGGCTAATAAGAAGCGGAAGATCGGTTCAATTGCGGAGGGATCTAGGATCCAAGACTCCGAGAAGGGTGAAAAGTCCATTTCTACTACAAACCCTTCGGAAACCCTTCAAGGGTCGCATATGGATTCGGGACCCTCGACGCTTTTACCTGATAAGAAGCTTTTACTCTTCATCCTCGACAGGCTTCAAAAGAAGGATATCTATGGTGTGTTTTCCGAACCAGTGGACCCCAACGAGCTTCCAGACTATCATGAAATTATAGAGCATCCGATGGATTTTGGGACTGTTCGTGGGAAGCTTACTTCTGGAGCTTATACCAGTTTGGAACAGTTTGAAAAAGACATTCTCTTAATCAGTTCAAATGCAATGCAATATAATGCCCCAGATACCATATATTTTCGGCAGGCACGTACCATACAAGAGTTAGCAAAAAAGAATTTTAAGAACCTGAGACAAGATAGTGATGAGAATGAACCAGAGCCTAAAGTAGCAAGAAGAGGTAGACCACCGACCAAGCATTTGAAAAAACCATTGGGTCGACCTTCCTTGGAACGTGCTGGTTCCGAGTTTTCCCCGGATGCCACTCTTGCTACTGGTGGTGAAAACACGAATCGGTCGAACGATTTGAGGAAAGGATTTCATCATTTCGAAAAAACTAGTTTAGCTGATTTTTCTGGCAGATTCTCCTTTTCTTCCAATAGTGATGCTGCTGCATTTAACTTGTTTAACCAGAGCAGAATTGATAGAAGCGAGGATATTACAGGTTCTGGACTGAGAATTAATTCAGTGAGACAGGGGAAAAGACCAATTGTCTCTGATGAGAATAGGCGTAACACATATAAGCAATTTCAAGCGGCAGCTGCTTTGCTAGAGCCCTCTGTGTTGAATACATTTGATAGAGAGAGGAAGCTTTTAATGCCGGTCGGACTTTTCTTGGAGCATGCTTATGCACGAAGCCTTGCCCGATTCGCTGCAGATCTCGGATCTGTAGCTTGGAGAGTTGCTTCGAAGAAGATCGAAAGATCTTTACCAGCAGGTTCAGGTTTTGGTCCTGGATGGGTTGTAGAAAATGATACCACACCAAAGAGAGTGTTTCTACCTCAAGCTGAACTCTGTCAAATGTCAACATTACAGCCCTATGCTGCAGACGTAAAGCCTCTTGCTCCTGAACAAAAGGGCGTTCGATCATCCGACAACTCCGAAGCTGATACTTCATCTAAGACACACGACGACGAGCCTTCTCATGCCCCCAGTTCAGATGGCCATTTAAGTAGGCCTCCCACTGAATTTGCTGCAACTTCATCATCACCGTCGAGTACTCAACGATCTTCTGAGCCGTGCAGGGGACAGGCTGAAGCGGTCGGAGGATTGAATCCCAGTAGTGATTATAATGTATTTGAAAGTAGTATTCCAACCTCAAGGCCTTCATTTCAGAAACAACGCGCGACTCCAACTATCCGCCCTGGTATGAATGGATTCAATGGTACTTATGCCTTTGATCTCTCTGCTCACAGGGGGAAACTAACAGGAGCATCCGAGCCTGCTGGTGAACAACCTCAGTCATCTCGAACGCTCGAGACGACAACCTCCAGGACTAATGCTAACTTCATCCATCCAGCAACAGATCCCAGTACAACAAACTCTTCCAGTTCATTGCTCGGGGCGGGGAACGAGGCTCATTCGCAAGGGCCATCACCAGCAGAAAAAACAACAACAATACACCACAAACCGGAATCAGTTCCCCCGGACGTGAACGCGAGATTTAAATCTCCAGGATCTCCTAGCTGTAGTAAGGTGGAGTGTGGTAACCCTGATTTAGTATTGCAGCTATGA 2235 46.94 MGKVVERKKRKKGRPSLLDLQKRNLKEQQEQEDEEQKRQNHNKPKRIDRSSAIPNPNYASSTPLRRSTRRNPNPDGLSPDDHDDAEYNQELARNRRERKLKLVLRLHSQKPPVNSSSLNSGGSDSNAEGDDNVASANKKRKIGSIAEGSRIQDSEKGEKSISTTNPSETLQGSHMDSGPSTLLPDKKLLLFILDRLQKKDIYGVFSEPVDPNELPDYHEIIEHPMDFGTVRGKLTSGAYTSLEQFEKDILLISSNAMQYNAPDTIYFRQARTIQELAKKNFKNLRQDSDENEPEPKVARRGRPPTKHLKKPLGRPSLERAGSEFSPDATLATGGENTNRSNDLRKGFHHFEKTSLADFSGRFSFSSNSDAAAFNLFNQSRIDRSEDITGSGLRINSVRQGKRPIVSDENRRNTYKQFQAAAALLEPSVLNTFDRERKLLMPVGLFLEHAYARSLARFAADLGSVAWRVASKKIERSLPAGSGFGPGWVVENDTTPKRVFLPQAELCQMSTLQPYAADVKPLAPEQKGVRSSDNSEADTSSKTHDDEPSHAPSSDGHLSRPPTEFAATSSSPSSTQRSSEPCRGQAEAVGGLNPSSDYNVFESSIPTSRPSFQKQRATPTIRPGMNGFNGTYAFDLSAHRGKLTGASEPAGEQPQSSRTLETTTSRTNANFIHPATDPSTTNSSSSLLGAGNEAHSQGPSPAEKTTTIHHKPESVPPDVNARFKSPGSPSCSKVECGNPDLVLQL 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11567020 11571933 - Carg18118-RA Car11g01413 157366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01413 744 MobiDBLite consensus disorder prediction 282 301 - -
Car11g01413 744 Coils Coil 17 42 - -
Car11g01413 744 MobiDBLite consensus disorder prediction 282 343 - -
Car11g01413 744 MobiDBLite consensus disorder prediction 133 157 - -
Car11g01413 744 MobiDBLite consensus disorder prediction 1 16 - -
Car11g01413 744 MobiDBLite consensus disorder prediction 158 178 - -
Car11g01413 744 ProSitePatterns Bromodomain signature. 203 259 IPR018359 -
Car11g01413 744 ProSiteProfiles Bromodomain profile. 197 267 IPR001487 GO:0005515
Car11g01413 744 Pfam Bromodomain 192 271 IPR001487 GO:0005515
Car11g01413 744 MobiDBLite consensus disorder prediction 1 179 - -
Car11g01413 744 MobiDBLite consensus disorder prediction 562 581 - -
Car11g01413 744 MobiDBLite consensus disorder prediction 648 703 - -
Car11g01413 744 MobiDBLite consensus disorder prediction 109 132 - -
Car11g01413 744 MobiDBLite consensus disorder prediction 536 552 - -
Car11g01413 744 MobiDBLite consensus disorder prediction 53 74 - -
Car11g01413 744 MobiDBLite consensus disorder prediction 17 48 - -
Car11g01413 744 MobiDBLite consensus disorder prediction 595 624 - -
Car11g01413 744 MobiDBLite consensus disorder prediction 522 744 - -
Car11g01413 744 MobiDBLite consensus disorder prediction 75 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01413 K22184 BRD9; bromodomain-containing protein 9 - csv:101218234 1098.19
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g01413 Car19g00614 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00998 Car-Chr1:9447600 Car11g01413 Car-Chr11:11567020 1.73E-44 dispersed
Car08g00216 Car-Chr8:1335676 Car11g01413 Car-Chr11:11567020 5.59E-10 dispersed
Car11g01413 Car-Chr11:11567020 Car07g00126 Car-Chr7:785788 5.48E-14 dispersed
Car01g01587 Car-Chr1:13145250 Car11g01413 Car-Chr11:11567020 1.24E-92 wgd
Car11g01413 Car-Chr11:11567020 Car19g00614 Car-Chr19:7603348 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g294 . . . . . Bpe12g00149 . . Cmo19g00818 Cmo11g01786 . . . . . Cpe04g00631 Cpe15g00642 Bhi05g01248 Tan02g0781 . . . . . Cla02g00347 Cam02g0356 Cec02g0357 Cco02g0363 Clacu02g0348 Cmu02g0345 Cre02g0677 . . . . . Csa07g00186 . Cme01g01147 Blo04g00606 Blo13g00473 . Bda14g00648 Bpe15g00784 . Bma03g00637 Bma08g00717 . . . Cma11g01333 Cma19g00798 Car11g01413 Car19g00614 . . . . . . . . . . . . . . . . Lsi11g01285 . Chy01g00594 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005813 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g01413 Car_Chr11 FPKM 3.678197 4.57107 5.671585 5.59633 5.427057 4.576424 5.923967 22.461071 23.003843 22.90439