Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01424 ATGGCTCTCTCTACCATCTCCAAATTAGCCCTTGCCCTCTCTGCAACTTTGTTCATCGGCTACGCTATCGCTCACGACTTCTCGATCGTGGGATATTCCCCCGAGCATTTAGCCTCCATGGATAAAACCATCGAGCTTTTCGAGTCGTGGATGTCGAGGCATAGTAAAACGTATAGGAGCATTGAAGAGAAGCTCCATAGGTTTGAGATATTCCTTGACAATTTGAAGCACATTGATGAGACAAACAAGAAGGTTTCTAGCTATTGGCTTGGGTTGAATGAATTTGCAGACCTGAGCCATGAAGAGTTTAAGAGTAAATATTTGGGATTGAAAGTCGAGTTTCCGAGGAAAAGATCAGCTCGTGGCTTTAGTTACTGGGACATCGAGGACGTGCCGGAGTCGGTCGATTGGAGACTCAAAGGAGCTGTTACTCCAGTCAAGAACCAAGGCTCATGTGGGAGTTGTTGGGCATTTTCAACTGTGGCAGCTGTGGAGGGGATAAACCAAATTGTTACTGGAAATCTAACCTCGTTGTCCGAACAAGAATTGATCGACTGCGATCGAAGCTTCAACAATGGATGCTATGGCGGTCTGATGGATTACGCCTTCCAATACATAATGTCGAACTCTGGACTTCGAAAGGAGGATGGACTACCCATATCTGATGGAGGAAGGAAAATGTATCAGAGAAAAGCCAAGGTGGGACTCCCCACCAACAATCCTCAACAATCCTCCCCTCGAACAAAGTATACCATAGAGTCTCCCCTGCGGCCTTTGGAGCCCTCAAATAGTCTCCCCTTAATTGAGGCTCGACTCCTTTCTCTGGAGATCTCGAACAAAGAACAATTTGATGTCGTAACGATCAGCGGTTACGAAGACGTGCCAGCAAACGACGAACAGAGCCTCCTAAAAGCATTGAGTAACCAACCTGTCAGCGTAGCCATTGAGGCTTCTGGCAGAAATTTCCAATTCTACAAAGGGGGAATATTCACAGGTCGATGCGGAACTGAGATGGATCACGGTGTGACCGCGGTCGGGTATGGTTCATCAGAGGGAACAGACTATATTATTGTGAAGAACTCATGGGGACCAAAATGGGGAGAAAATGGATACATTAGGATGAAGAGAAATACCGGAAAACCTGAAGGATTATGTGGAATCAACCAAATGGCTTCGTATCCAACCAAAGAGAATTAA 1197 46.03 MALSTISKLALALSATLFIGYAIAHDFSIVGYSPEHLASMDKTIELFESWMSRHSKTYRSIEEKLHRFEIFLDNLKHIDETNKKVSSYWLGLNEFADLSHEEFKSKYLGLKVEFPRKRSARGFSYWDIEDVPESVDWRLKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVTGNLTSLSEQELIDCDRSFNNGCYGGLMDYAFQYIMSNSGLRKEDGLPISDGGRKMYQRKAKVGLPTNNPQQSSPRTKYTIESPLRPLEPSNSLPLIEARLLSLEISNKEQFDVVTISGYEDVPANDEQSLLKALSNQPVSVAIEASGRNFQFYKGGIFTGRCGTEMDHGVTAVGYGSSEGTDYIIVKNSWGPKWGENGYIRMKRNTGKPEGLCGINQMASYPTKEN 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11628123 11630234 + Carg18106-RA Car11g01424 157377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01424 398 Pfam Cathepsin propeptide inhibitor domain (I29) 47 103 IPR013201 -
Car11g01424 398 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 355 374 IPR025661 -
Car11g01424 398 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 338 348 IPR025660 -
Car11g01424 398 Pfam Papain family cysteine protease 131 395 IPR000668 GO:0006508|GO:0008234
Car11g01424 398 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 149 160 IPR000169 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01424 K16290 XCP; xylem cysteine proteinase [EC:3.4.22.-] - csv:101206340 630.557
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01109 Car-Chr11:8810869 Car11g01424 Car-Chr11:11628123 3.24E-117 dispersed
Car11g01424 Car-Chr11:11628123 Car12g00036 Car-Chr12:174367 1.87E-75 dispersed
Car13g00460 Car-Chr13:6945626 Car11g01424 Car-Chr11:11628123 2.81E-08 transposed
Car01g01605 Car-Chr1:13208394 Car11g01424 Car-Chr11:11628123 6.76E-174 wgd
Car11g01424 Car-Chr11:11628123 Car19g00626 Car-Chr19:7680081 1.84E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g306 . . . . . . . . . Cmo11g01798 . . . . Sed05g2142 Cpe04g00640 . Bhi05g01552 Tan02g0549 Cmetu01g0266 Lac12g0456 Hepe02g0352 . . Cla02g00332 Cam02g0341 Cec02g0342 Cco02g0346 Clacu02g0332 Cmu02g0330 Cre02g0662 Cone12ag1288 Cone8ag1342 . Cone10ag1012 . Csa07g00207 . . Blo04g00610 Blo13g00466 . Bda14g00652 Bpe15g00777 . . . . . . Cma11g01323 . Car11g01424 . . . . . . . . . . . . . . . . . Lsi11g01302 . Chy01g00573 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002657 1 2 2 0 1 1 3 1 1 2 2 2 2 2 2 2 1 3 2 2 2 2 2 2 2 2 2 2 2 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g01424 Car_Chr11 FPKM 130.409286 145.845215 7.020416 9.176875 5.186499 0.0 5.933634 47.910282 50.397736 56.611023