Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01427 ATGGCTGCATTTATAGCTATGATAGTCTACATGGTTCTTTTGCCAACACCCAACATCTTTGCGGCTAAGGATCAAGAGTGGAAATCTGCTACTGCAACATACACCAAAGAAATAGATGGGTCAATCGTTGCAGGGAGTACCTGTGGAGCATGCTTTGAGCTTAGATGTGTTGACCACATCTTGTGGTGCTTGGAAGGAAGTCCGACCGTCATCCTAACCGCCACCGACTTCTGTCCTCCAAATGATGGCCTATCTTCTGATTATGGTGGATGGTGCAACTTTCCCAAAGAACACTTCGAGATGTCAGAGGCAGCATTTACTGAAATAGCAGAGAAAAAAGCAGATATTGTGCCAGTTCAATATAGGAGGGTGAGGTGTGACAGAAGTGGTGGATTAAGATTCACAGTTAGCGGGAATTCTCGATTCTTTCAAGTTTTGATTACTAATGTTGGAATGGATGGTGAATTAGTGGCAGTGAAAGTGAAGGGATCTAGAACAGGATGGATACCTCTGGCAAGGAACTGGGGACAAAACTGGCAAAGCAATGTCAATCTTCATGGGCAACCTCTCTCTTTTGAAGTTACCTCTAGCAGTGGAAGAGCACTTACTTCCTATGGTGCTGCACCTGGAAACTGGCAGTTCGGGCAGACATTTGAAGGGAAACAATTTTGA 672 44.64 MAAFIAMIVYMVLLPTPNIFAAKDQEWKSATATYTKEIDGSIVAGSTCGACFELRCVDHILWCLEGSPTVILTATDFCPPNDGLSSDYGGWCNFPKEHFEMSEAAFTEIAEKKADIVPVQYRRVRCDRSGGLRFTVSGNSRFFQVLITNVGMDGELVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGAAPGNWQFGQTFEGKQF 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11641504 11643468 + Carg18103-RA Car11g01427 157380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01427 223 Pfam Expansin C-terminal domain 133 209 IPR007117 -
Car11g01427 223 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 141 220 IPR007117 -
Car11g01427 223 Pfam Lytic transglycolase 45 121 IPR009009 -
Car11g01427 223 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 131 IPR007112 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g01427 Car19g00632 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01427 Car-Chr11:11641504 Car01g00552 Car-Chr1:3258039 1.78E-74 dispersed
Car11g01427 Car-Chr11:11641504 Car19g00632 Car-Chr19:7703571 5.82E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01427 - - csv:101213241 412.149