Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01430 ATGGCTGTTGTTCGTGGAGGTTCATATGACAGCACCTCTCATGGAGCGAATACTCCAGGACTAGTAACTCCTGAACAGATTAACCATCTTATTTCGAACTTGAATTTGCTGGATCAAATAGGCAATTTTGAGCATTACAACATGAACCGCATCAGATTGGTGTGGTCTCGCATGTGGAGTGTTCTCTCTGATTTCTTTGTGTCAGTTGGCTTATCAGAGAATCTATCGGTTGCAATATTTGTGATGGATTCACTGAGGCAGCTTGCGATGAAGTTTTTGGAGCGTGAGGAGCTTGCAAATTATAACTTCCAGAATGAATTTCTGAGACCCTTCGTAATTGTTATGCAGAAAAGCAACTCCACAGAAATCAGGGAATTAATAGTTCGGTGCATTTCGCAAATGGTTCTCAGTCGTGTCAACAATGTCAAATCTGGATGGAAAAGTGTTTTTATGGTTTTCACTGCTGCTGCTGCTGATGAGCGGAAGAATATTGTCTTATTGGCTTTTGAAACGATGGAAAAAATAGTTCGAGAATATTTTCCTTATATAACAGAGACTGAAACTACAACATTTACCGATTGCGTTCGGTGTCTCATCACTTTCACAAATAGTAGATTTAACAGTGATGTCAGTCTCAATGCCATTGCGTTCCTTCGGTTTTGTGCTGTAAAGCTTGCAGAAGGGGGACTTGTTTGCTACGAGATGACTGGAGATAATGTTTCATCCAATACTCCTGATGCACCCCTATCCACACCCGTACCCACAGATAAGGACGATTATGCTTCCTATTGGGTTCCTTTACTTGCAGGGCTATCAAAGTTAACTTCTGATCCTAGATCACCAATCAGAAAAAGTTCCTTGGAAGTTCTTTTTAATATCCTAAAAGATCATGGCCATCTTTTCTCGCGTCAGTTTTGGGTTGGTGTTATCAATACCATAGTTTTCCCCATATTTAGTTCTTTGCATGACAAGAAAGAAATGGACGAGGATGAAAATGATGAATATTCAGAAGGAACTACATGGGATTCTGATACCTGTACAGTGGCAGCAGATTGTTTAGTAGATCTGTTCATTAGCTTTTTCAATGTTATAAGGTCTCAACTACCCGGGGTGGTGTCGATTCTGACAGGATACATTAGGAGTCCGATCCAGGGTCCTGCCAGCACGGGTGTTGCTGCATTAATGCGCTTGGCGGGCGACTTGGGTAACAGGCTTACCGAAGACGAATGGAGAGAGATTTTTCTTGCTTTGAAGCAAGCTGCCACATTAACAGTGCCTGGGTTTATGAAGGTCCTGAGAACCATGGATGATGTCAATGTTCTCGGGATCGCTCAATCTTATTATGATGTGGATGTGGCTTCTGATCAAGGTTTGTCGGCTGATGGTCTTGACGACGACGATCTGCAGATGGCGTCCTACATTGTTTCGAGGATGAAGAGTCATATCGCAATGCAACTCCTCATCATACAGGTCATTACTGATCTGTACAAGAGCCATACCCAACCATTCTCAGAAGCCAACATTTCGATCATTCTCGATATCTTCTCTTCCGTTGCCACACATTCCCAGAAACTGAATTCCAACACAGTCCTTCATAAGAAGCTACAGAAAGCTTGCTCCATCCTCGAGATTTCCGACCCACCCCTGGTTCACTTCGAAAACGAGTCATATCGGAGCTACCTCAACTTCCTCCAGAATATGCTCGCAGACAGTCCTTCACTGACTAACGCAACTCTCGTAGAATCCGAACTCGTCGTAGTTTGCGAACAAATTCTGCATATTTACTTGAAGTGTACCGGGGCGCCAAGTGAGAAGAAAGAACCCAACCAGCCTGTGCTACATTGGATTCTTCCATTGGGGTCAGCAAAGAAGGAAGAGGTAGCTGCTCGTACGTCTCTAGTCGTCTCGGCGTTGGAGGTTATCCGCGGGTTCGAAAGGGACCTATTTAAAAGGTGTGTTCAACGGCTTTTCCCATTGTTGGTAGATCTTGTTAGGAGTGAACATAGCTCTGGAGAAGTTCAGCTTGTTTTGAGCAGCATATTACAATCATGTATAGGCCCAATAATTATGCAATAA 2076 43.35 MAVVRGGSYDSTSHGANTPGLVTPEQINHLISNLNLLDQIGNFEHYNMNRIRLVWSRMWSVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIVMQKSNSTEIRELIVRCISQMVLSRVNNVKSGWKSVFMVFTAAAADERKNIVLLAFETMEKIVREYFPYITETETTTFTDCVRCLITFTNSRFNSDVSLNAIAFLRFCAVKLAEGGLVCYEMTGDNVSSNTPDAPLSTPVPTDKDDYASYWVPLLAGLSKLTSDPRSPIRKSSLEVLFNILKDHGHLFSRQFWVGVINTIVFPIFSSLHDKKEMDEDENDEYSEGTTWDSDTCTVAADCLVDLFISFFNVIRSQLPGVVSILTGYIRSPIQGPASTGVAALMRLAGDLGNRLTEDEWREIFLALKQAATLTVPGFMKVLRTMDDVNVLGIAQSYYDVDVASDQGLSADGLDDDDLQMASYIVSRMKSHIAMQLLIIQVITDLYKSHTQPFSEANISIILDIFSSVATHSQKLNSNTVLHKKLQKACSILEISDPPLVHFENESYRSYLNFLQNMLADSPSLTNATLVESELVVVCEQILHIYLKCTGAPSEKKEPNQPVLHWILPLGSAKKEEVAARTSLVVSALEVIRGFERDLFKRCVQRLFPLLVDLVRSEHSSGEVQLVLSSILQSCIGPIIMQ 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11652983 11656446 + Carg18100-RA Car11g01430 157383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01430 691 Pfam C-terminal region of Mon2 protein 257 327 IPR032817 -
Car11g01430 691 Pfam Domain of unknown function (DUF1981) 91 173 IPR015403 -
Car11g01430 691 Pfam BIG2 C-terminal domain 484 682 IPR046455 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01430 K18442 ARFGEF, BIG; brefeldin A-inhibited guanine nucleotide-exchange protein - csv:101212521 1146.72
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g01430 Car19g00635 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01430 Car-Chr11:11652983 Car14g01789 Car-Chr14:13990664 0 dispersed
Car11g01430 Car-Chr11:11652983 Car19g00635 Car-Chr19:7715321 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g315 . . . . . Bpe12g00159 . . . Cmo11g01803 . . . . Sed05g2136 Cpe04g00646 Cpe15g00658 Bhi05g01542 Tan02g0540 Cmetu01g0851 Lac12g0438 Hepe02g0345 . . . . . . . . . . . . . . Csa07g00216 . . . Blo13g00462 . . . . . . . . . Cma11g01317 Cma19g00818 Car11g01430 Car19g00635 . . . . . . . . . . . . . . . . Lsi11g01311 . Chy01g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0025975 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g01430 Car_Chr11 FPKM 0.0 0.0 1.142261 1.020982 617.039551 628.939148 642.149536 0.0 0.0 0.0