Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01433 ATGCGTCCAATAATTTCGAATTCAATCTTTACGTTGGCGACGGCATGCGAGCATTTGAGAGAGTTGTCGGCGATTCATTGGAACAAAGTTTGTGAAGCCTTCCAAGGCTGCGCTACCGTACGAAGAATCCATTGCCGTCCTGTGAACTCTCAGCGCTCTTTCACCGTCTCTGGGCGATCATCGTCCAATTTTCCACTTAATCCACGTGGGAGAGATGGAGATGATTATTCTATGGCTATGGTGCATGATTCCATGGAGGAAGAGGAAATGATTGATAGCCCTCCTTTGAGTGGTCTTGGTTGTGGTGCTGGCAGTGGTGAGATTTATCTTCCTGATGGTGATCTTTTGGATCTTGAACCTCATGAAGGAATGGAATTCGAGTCTGAAGAGGCTGCCAAGGCTTTCTATAACTCGTATGCTCGACGGGTTGGGTTTAGTACTCGTGTCAGCTCCTCCCGTCGATCTAGGCGTGATGGAGCGATTATACAGAGGCAATTTGTTTGTGCCAAAGAGGGGTTTAGGAATATGAATGAGAAGCGAACTAAAGACCGAGAAATTAAGCGTCCTCGAACCGTTACAAGAGTCGGTTGCAAAGCATCTTTATCTGTGAAGATGCATGATTCTGGGAAATGGGTTGTGTCTTGTTTTGTTAGAGAGCATAACCATGAGTTAGTTCCTCCTGATCAGGTGCACTGCTTAAGGTCTCATAGGCAAATATCAGGTCCAGCAAAGACCTTGATTGATACTTTACAGGCTGCTGGGATGGGACCTCGCAGGATTATGTCTGCACTCATAAAGGAGTATGGTGGAATCAGTAAAGTTGGATTTACGGAGGTCGATTGTCGAAATTATATGAGGAATAACCGCCAAAGGAGCTTAGAAGGCGACATTCAACTGCTGTTGGATTACTTAAGGCAGATGCATTCTGAAAATCCTAACTTCTTCTACGCCGTGCAGGGAGAGGAGGATCAATGGGTAGGAAATGTCTTTTGGGCTGATCCAAAGGCTCAGATGAACTATACTTACTTTGGCGATACTGTTACATTCGACACGACCTATAGATCGAATAGATATCGTCTGCCCTTCGCTCCTTTCACCGGGGTGAATCACCATGGACAGCCAGTGTTGTTTGGTTGTGCTTTTCTAATAAATGAATCTGAAGCATCGTTTAATTGGCTATTTAGAACGTGGCTTTTAGCAATGTCTGGTCACCCACCTATGTCGATTACTACCGATCATGATGCAGTAATACAGTCAGCCATCGCACAAGTTTTCCCCGAGACCCGTCACCGTTTTTGCAAATGGCATATTTTCAAGAAATGCCAGGAGATGCTATCACATGTGTTCCTTAAACATCCAAGCTTTGAAGCTGACTTCCATAAGTGTGTAAACTTGACTGACTCCATTGAGGAATTTGAGTCCTGCTGGTTGTCACTCGTCGACAGATATGATCTCAGGGATCACGAGTGGCTTCAGACGGTTTACTCAGCTCGGAGGCAGTGGGTTCCGGTGTATTTGAGGAACACTTTTTTTGCTGAAATGTCTATTACACAACGAAGTGATAGCATGAATTCATATTTTGATGGGTATGTGAATGCTTCAACCAATTTGAGTCAGTTCTTCAAACTGTATGAAAAAGCTCTCGAGAGTCGAAATGAGAAAGAAGTAAAAGCAGATTATGATACAATGAACACTTCCCCTGTTCTAAAGACTCCATCACCAATGGAAAAACAGGTTTCTGAGCTTTACACCAGGAAGCTGTTTTCACGGTTCCAAGACGAGTTAGTTGGCACGTTAACTTTCATGGCCTCGAAGGCCGATGATAACGGGCAAGTTATAACTTATCAAGTGGCCAAATTTGGAGAGGATCATAAAGCTCACTATGTGAAGTTTAATGTTGTGGAGATGAGGGCAAATTGTAGTTGCCAGATGTTTGAGTTTTCAGGCCTTTTGTGCAGACATATCTTGGCTGTCTTCAGAGTGACCAATGTGCTTACTCTTCCATCTCATTACATATTGAAACGATGGACGAGAAACGCGAAGAGTAACGTGATATTGGAGGACCATGTGAATGATATCTATAACAACTATCTCGAATCTCATACGGTGAGATATATTACCCTACGCCACGAGGCTTTTAAATTCATCGAGGAAGGAGCAAAGACTATCGATACATATAACGTGGCAAAGGATGCCCTTCAGGAGGCTGTAAAAAGGGTTTCGCATACGCCAAGGAATAACAGTAAAATTTCTTCGATCGATGAGCGAATTAAAGCGGACCCTGCAAATGATATAAGCTATACTAATCATAGTAGTAGCACATGTCAAGACGGGAGCTTGGGAATAAACATGTCCGAGGACGATTTGGACAAGAAAATCAATGAACTATCGAACGAGTTGGAGTGTGCAAATCGGAACAAGTCTTTGACTCACCTCAATACCAAAACATTGTGTAACCTTGGTCCCATCGAGAAGTCGACTAGTTCGGGGGATGTAAACTTGTGTTTTTGTCGAGCAATCGAGGCTCCTACATCGGGGGAGAAAATGACTGTTTTGAAGACCGTGGCGATGTTCGTCTTATTGATGGCTAACCTTCTCAGATCAGCATCGTTTTCGACATCAATATCTGAGACCCAAATCCGATTCACCAAGCTTTGGCCACTGCAGAGAAGTAACCAATGGCGACGTGGGGTCACCGGCAAATGGGAATCGACGGAACGGAACGGAATCAAC 2733 44.09 MRPIISNSIFTLATACEHLRELSAIHWNKVCEAFQGCATVRRIHCRPVNSQRSFTVSGRSSSNFPLNPRGRDGDDYSMAMVHDSMEEEEMIDSPPLSGLGCGAGSGEIYLPDGDLLDLEPHEGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRTKDREIKRPRTVTRVGCKASLSVKMHDSGKWVVSCFVREHNHELVPPDQVHCLRSHRQISGPAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSLEGDIQLLLDYLRQMHSENPNFFYAVQGEEDQWVGNVFWADPKAQMNYTYFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEASFNWLFRTWLLAMSGHPPMSITTDHDAVIQSAIAQVFPETRHRFCKWHIFKKCQEMLSHVFLKHPSFEADFHKCVNLTDSIEEFESCWLSLVDRYDLRDHEWLQTVYSARRQWVPVYLRNTFFAEMSITQRSDSMNSYFDGYVNASTNLSQFFKLYEKALESRNEKEVKADYDTMNTSPVLKTPSPMEKQVSELYTRKLFSRFQDELVGTLTFMASKADDNGQVITYQVAKFGEDHKAHYVKFNVVEMRANCSCQMFEFSGLLCRHILAVFRVTNVLTLPSHYILKRWTRNAKSNVILEDHVNDIYNNYLESHTVRYITLRHEAFKFIEEGAKTIDTYNVAKDALQEAVKRVSHTPRNNSKISSIDERIKADPANDISYTNHSSSTCQDGSLGINMSEDDLDKKINELSNELECANRNKSLTHLNTKTLCNLGPIEKSTSSGDVNLCFCRAIEAPTSGEKMTVLKTVAMFVLLMANLLRSASFSTSISETQIRFTKLWPLQRSNQWRRGVTGKWESTERNGIN 911
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11672743 11677559 + Carg18097-RA Car11g01433 157386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01433 911 Coils Coil 786 806 - -
Car11g01433 911 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Car11g01433 911 Pfam MULE transposase domain 347 440 IPR018289 -
Car11g01433 911 ProSiteProfiles Zinc finger SWIM-type profile. 631 663 IPR007527 GO:0008270
Car11g01433 911 Pfam FAR1 DNA-binding domain 135 226 IPR004330 -
Car11g01433 911 Pfam SWIM zinc finger 615 661 IPR007527 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01433 - - - csv:101218471 1372.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g01433 Car20g00607 CCT
Car11g01433 Car20g00607 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00993 Car-Chr11:6814430 Car11g01433 Car-Chr11:11672743 0 dispersed
Car11g01433 Car-Chr11:11672743 Car16g00443 Car-Chr16:2803275 2.32E-147 dispersed
Car11g01433 Car-Chr11:11672743 Car19g00638 Car-Chr19:7740014 0 wgd
Car11g01433 Car-Chr11:11672743 Car19g00665 Car-Chr19:7910222 8.56E-71 wgd
Car11g01433 Car-Chr11:11672743 Car02g00188 Car-Chr2:1130124 7.41E-09 wgd
Car11g01433 Car-Chr11:11672743 Car20g00607 Car-Chr20:3408109 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g320 . . . . . . . . . . . Cma20g00708 . Car20g00607 . . . . . . . . . . Cla02g00322 Cam02g0331 Cec02g0331 Cco02g0335 Clacu02g0321 Cmu02g0320 Cre02g0653 . . Cone3ag1258 . . . . . . . . . . . . . . . Cmo20g00702 . . Car11g01433 . Cpe16g00358 . . . . . . . . Cla02g01052 Cam02g1123 Cec02g1127 Cco02g1163 Clacu02g1110 Cmu02g1074 Cre02g1378 Lsi11g01315 . . Cme11g01021
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4337 PF10551 MULE 7.40E-29 CL0219 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g01433 Car_Chr11 FPKM 2.68069 2.556349 5.04921 3.269785 1.941762 2.161162 2.916066 0.769419 0.391692 0.27512