Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01444 ATGGGTAGTGGCCATGTCTTTCATGTCTTTCCACTTAAAGAGGGAGAAATTATGGGCATGTTGATTCTAGCTTTGGCAATCTCGAAATATTTACAAGGAAACGTGCGAAGATCTGATTGCAGCATGGGTTACTTATGTGATTTCTGTGGGCATCAAAGGTCGATTGTTTACTGTCGATCCGACTCTGCAGCTTTGTGCTTATCTTGTGACCGTAATGTTCACTCTGCTAATGCACTGTCGAGGCGCCACTTGAGGACGTTGTTATGTGATAGGTGCCATTCACAAGCTGCATTTGTTAGATGTCCTGAAGAGAATATTTCACTTTGTCAAAATTGTGATTATATGGGGCATAGCTCATCTGCCTCCATTTCGTCCCGAAAGAGGCAACCAATCAATTGTTTCTCAGGATGCCCGACAGCTGCAGAACTCTCATCTATCTGGTCGTTTGTTCTAGATCTCCCTTCTGTTGGCGATGCTTGTGAACAAGAATTAGGATTGATGAGCATTGCTGAAAATAGTGCAGTAAATGCCTGGGGCCCTGACGATCAAGCTGGTCAAAATGTATCTGGTGCAGATCAAACCAATGAATTCTCAAATGAGGATAGATCAATTTGGTATGGCTCCTCTTCAATGCCTCAATATCCATCCAAGCTTCACATCGCGGACCAACCAATGACGATAGATGCTACTTCACCCAAGTTGCACTGTGCTGGAACAAAAGGTCCTGGACTCGATATTGAAGATGACCTCTACGAGAATTTGAATATGGATGAAGATAGTTTGAATCTTGAAAACTATGATGAACTATTTGGTGTATCTCTCAGTTTTTCTGAAGAATTGCTAGAGAATGGTGGTATTGATAGCTTGTTTAGGATGAAAAGTCTGTCCGCCACGAAATCTGGTTGCCCTGGTGTGCCTGCAGCAGAGGGAGCGTCCGTTGGTTTAGTTAATAATACGATGCGTCCAGCGAGCAGTAATGCAGCATCTGCAGATTCCATGATGAGTGCGAAGACTGAACCGATTCTCTGTTATAACAATAAGCAAGAGCACTCCAGCCTATCATTTTCTGGCATGACGGGAGAGAGTAGCGCAGGCGAACCTCAAGACTGTGGAGCTTCACCAATGCTTCTAATGGGAGAGCCTCCTTGGTGTTCTATGGCCACTGAGAGTTCCTTCCAGTCATCTAATCGTAGCGATGCCGTAATGCGTTACAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTACGCTTCTCGCAAAGAGAGGGCCGATATTAGAAGGCGTGTCAAGGGGCGCTTTGTTAAAGCTGGAGAAGCGTATGACTATGATCCACTGAATCAAACCAGAAGCTACTGA 1365 44.54 MGSGHVFHVFPLKEGEIMGMLILALAISKYLQGNVRRSDCSMGYLCDFCGHQRSIVYCRSDSAALCLSCDRNVHSANALSRRHLRTLLCDRCHSQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCFSGCPTAAELSSIWSFVLDLPSVGDACEQELGLMSIAENSAVNAWGPDDQAGQNVSGADQTNEFSNEDRSIWYGSSSMPQYPSKLHIADQPMTIDATSPKLHCAGTKGPGLDIEDDLYENLNMDEDSLNLENYDELFGVSLSFSEELLENGGIDSLFRMKSLSATKSGCPGVPAAEGASVGLVNNTMRPASSNAASADSMMSAKTEPILCYNNKQEHSSLSFSGMTGESSAGEPQDCGASPMLLMGEPPWCSMATESSFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKERADIRRRVKGRFVKAGEAYDYDPLNQTRSY 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11731118 11734639 - Carg18086-RA Car11g01444 157397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01444 454 ProSiteProfiles Zinc finger B-box type profile. 84 131 IPR000315 GO:0008270
Car11g01444 454 ProSiteProfiles Zinc finger B-box type profile. 41 88 IPR000315 GO:0008270
Car11g01444 454 Pfam CCT motif 397 439 IPR010402 GO:0005515
Car11g01444 454 ProSiteProfiles CCT domain profile. 397 439 IPR010402 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g01444 Car19g00649 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00641 Car-Chr7:3251437 Car11g01444 Car-Chr11:11731118 2.40E-151 dispersed
Car11g01444 Car-Chr11:11731118 Car20g00520 Car-Chr20:2865389 2.10E-63 dispersed
Car11g01444 Car-Chr11:11731118 Car19g00649 Car-Chr19:7815952 0 wgd
Car11g01444 Car-Chr11:11731118 Car20g00602 Car-Chr20:3391655 1.26E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4338 PF06203 CCT 1.10E-15 CL0281 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01444 - - csv:101216326 720.694