Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01462 ATGTCTCAAAATTCTAAGTTATCTTGTTCCAATGTCATATTACCTGCTGGGTTGAAGGCGAAGAGGGCTAGGGAGCATTTCCATGGCCAACGGTGGAGTAATCTTCTTTATCTCTTGCCATTTGGCGTCATTTTGATTGTGGGTCTTTGGTATATTTTGAGTCTTTGTGATGGGAATTCTGTTCGAGAAGTGGAGATTCCTGATACGTGTAAAGAGAAGGCTTGGAACTTGCTGAAGCATTACAATGTTAGTGAGAGTCAGTTTCATGCTTTGGCTTCGTTCTTCTTTCATTCAGATCAGGCAGCATCTCTTCAGTGTGCTGAAGACCCAGGGCCTGGTATTGGCCTGAAAGAATGCATTGCTTGCGCTTTGAAGATGCTAGAAGAGGAGCTAAACTTGCAAAAGCAGCGTGGATGGCTTTCTGAAAATTTACAACCTGAAGGCCAGTGCCCAATTAGGGGTGAGATGGATTCCTTCAATAATGATCTATTGCAGTTAGTGGACAAGACACGCTCACTTACTTCACAATCTTCTTTTGCTTTTGTGTCTCCTTGTCATCAGATTCATGGAGAGAAGATCTTGCATTCTAAGGAAATTGGAAACGAGCATTCGCGAAGTTTGAACGGATTAGTAATGGCGTGTTTATGGATCCTTGCTGTAGTGATATCATGTCTGAAGATGTCTAGTTTTCATTTGAAACTAAGGAACCATAAGCATAAGCCAATAAAGCATCCCACGGTCGAGAAGCAGCCAATGATTCAACTGCAGCAAGTGTTGCTACAGAAGAAGCAGTTAGATCTATCTCCAAGTCCTCCTAAAGGGGCTGGAAAATGGAGAAAGAAGCTTCTTATAATATTTGTTTTACTTGGAGTTATTGGATCCTTTTGGCTCTTTTGGTATTTAAACAACAAAATCATCCTGAGGAGAGAAGAAACACTTGCGAACATGTGTGATGAGCGAGCTCGAATGTTACAGGACCAATTCAACGTTAGCATGAACCATGTTCATGCCTTGGCTATTCTGGTCTCCACTTTTCACCATGGCAAGCACCCTTCTGCCATTGATCAGAAAACATTCAGTGAATATGCAGAAAGAACGTCTTTTGAGCGACCACTAACCAGCGGCGTGGCGTATGCTTTGAAAGTTAACCATTCCGAAAGAAAGCAATTTGAAGAGGAACACGGATGGACAATTAAGAAGATGGGAACAGAGGACCAGACTCTTGTTCAGGATTGTATTCCTGAGAATTTAGATCCTGCTCCCTTTCAAGATGAATATGCCCCTGTGATATTTTCACAAGAAACTGTATCACATATAGTTTCCATTGACATGATGTCGGGAAAGGAAGACCGCGAAAACATCTTACGAGCAAGGGCTTCGGGGAAGGGAGTACTGACATCGCCTTTCAAGCTTCTTAAGTCCAATCACCTAGGTGTTGTACTCACTTTTGCTGTCTATAACACTGACCTTCCTCCTGATGCAACACCAGAGCAACGTACTGAAGCTACTGTTGGGTATCTCGGAGCATCCTATGATGTTCCATCACTGGTGGACAAGCTTCTGCACCAACTTTCCAGCAAACAGTCAATTGTTGTTGATGTTTATGATACAACTAATGCATCTGGTCCCATCAAGATGTATGGTTCTGATGTGGTTGATACTGGTCTATTGCACATTAGCAACCTGGATTTTGGAGACCCTCAAAGGAAGCATGAGATGCATTGCAGATTTAAGCAGATGCCTCAATTACCATGGATGGCTATAAATGCATCAGTGGGAGTTCTTGTTATTACTTTACTCGTTGGACATATATTTTATGCGGCGATAAGTCGAATCGCAAAAGTGGAGAATGACGTTCATGAGATGATGAAACTCAAAACTCGTGCTGAAGCTGCAGATGTGGCAAAGTCTCAGTTTCTTGCTACTGTTTCTCATGAGATCAGGACGCCAATGAATGGTGTTTTAGGGATGCTGAAAATGCTGATGGACACTGATCTTGACCCAAACCAACAGGACTATGCCCAAACTGCATATGATAGTGGGAAAGAATTGATATCACTAATAAATGAGGTTCTTGATCAAGCTAAAATAGAATCAGGCAGACTTGAACTCGAAGATGTACCGTTCGATCCACGAGCTTTACTGGATAATGTGCTGTCGATGTTCTCTGGAAAATGCCATGAAAAGGGGATAGAGTTAGCTGTTTATGTCTCTAATCTAGTCCCGGAAGTTCTCATTGGCGACCCGGGACGCTTTCGGCAGATAATCACCAATCTTGTGGGAAACTCAATTAAGTTCACCAACGACAAAGGACATATATTCGTTACCGTGCACCTAGCAGACGAACTGAATACTCCGCTTGATGCGATGGACAGCGTGCTAAGACAAGGCTTAGATTTAGTAAAAGAGACGTCGAAAAAATGTCATAATACATTAAGCGGGTTTCCAGTTGTTGAAAGGTGCAAGAGTTGGGAGCATTTCGAGATATTTAGTAGAACGGATGCGATGAAGGAAGACGACTTAATTAAATTGCTTGTATCGGTCGAGGATACAGGCCATGGAATTCCTTTACAAGCACAAAGTCGAATATTTACGCCTTTTATGCAAGCTGATAGTTCGACTTCGCGTAAGTATGGTGGGACTGGAATAGGGCTGAGCATCAGCAAATGTCTGGTGGAACTAATGGGTGGAGAGATAGGTTTTGTGAGCCATCCTAGTGTTGGCAGCACATTTTCGTTTACTGGATGTTTGAGAAAAGGCGATCCAAGGTCTCTCGATACAAAGTGGCAGCAGAACGATCCAACCGTATTGGATTTCCGAGGACTGCAAGCGTTGGTAATAGATAATAGAAGCATTAGAGCTGAGGTAACAAAATATCATCTCAAGAGGTTAGGGATCTCGGTAGATATAGTTTCGAGTCTGGTTTCAGCGCACGAATACGTAAAGAACAATTGCATCAAAAGTCCATCCAAGTCATTGGCCATGGTGCTTATCGACAAAGATGTATGGGATAACCAAACCGGTCCGACGATCGCTCGTGTATTTAAAGAACATGGGGTAAATGGCAAAGAAGAATCAACACAAAGTCCTAAGATCTTTCTCTTGGCTACCTCTGATCTTCAAGAGACGAGAGCTCTTAAGTCAACCGGTTATATTAATAATGTAATGACGAAACCTCTTAGGTTGGGTGTCTTGATTGGATGCTTCCAGGAAGCTTTCGGGAAGGTAAATCGAAAGAAGCCGTCGATTCTCGGGAACTTACTGAGAGAGAAGCAAATACTGGTGGTCGATGACAATGCCGTTAATAGACGAGTCGCAGAAGGCGCTCTAAAGAAATACGGAGCCAAGGTTACCTGTGTGGAAAGTGGTAGAGCTGCTATTTCCTTGTTGAAACCACCACACAAGTTCCATGCCTGCTTCATGGATCTTCAGATGCCTGAGATGGACGGGTTTACAGCAACACGAGAGATACGAAATATCGAAAAGAAGGTTAACGAGGACATTGCTTCTGGGAAAGCATCAAGTGATATGTTTGGGAATGTGGCTGTTTGGCATACACCAGTGTTGGCCATGACAGCTGATGTGATTCAGGCTACAAGTGAAGCATGCATGGCCTGCGGGATGGATGGTTATGTCGCAAAGCCTTTCGAAGAAGAAAAATTATATTCAGCTGTAGCTAGATTCTTCGAGTCTGATGGCGGGACTAGAATATGA 3714 43.08 MSQNSKLSCSNVILPAGLKAKRAREHFHGQRWSNLLYLLPFGVILIVGLWYILSLCDGNSVREVEIPDTCKEKAWNLLKHYNVSESQFHALASFFFHSDQAASLQCAEDPGPGIGLKECIACALKMLEEELNLQKQRGWLSENLQPEGQCPIRGEMDSFNNDLLQLVDKTRSLTSQSSFAFVSPCHQIHGEKILHSKEIGNEHSRSLNGLVMACLWILAVVISCLKMSSFHLKLRNHKHKPIKHPTVEKQPMIQLQQVLLQKKQLDLSPSPPKGAGKWRKKLLIIFVLLGVIGSFWLFWYLNNKIILRREETLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKTFSEYAERTSFERPLTSGVAYALKVNHSERKQFEEEHGWTIKKMGTEDQTLVQDCIPENLDPAPFQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLPPDATPEQRTEATVGYLGASYDVPSLVDKLLHQLSSKQSIVVDVYDTTNASGPIKMYGSDVVDTGLLHISNLDFGDPQRKHEMHCRFKQMPQLPWMAINASVGVLVITLLVGHIFYAAISRIAKVENDVHEMMKLKTRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDPNQQDYAQTAYDSGKELISLINEVLDQAKIESGRLELEDVPFDPRALLDNVLSMFSGKCHEKGIELAVYVSNLVPEVLIGDPGRFRQIITNLVGNSIKFTNDKGHIFVTVHLADELNTPLDAMDSVLRQGLDLVKETSKKCHNTLSGFPVVERCKSWEHFEIFSRTDAMKEDDLIKLLVSVEDTGHGIPLQAQSRIFTPFMQADSSTSRKYGGTGIGLSISKCLVELMGGEIGFVSHPSVGSTFSFTGCLRKGDPRSLDTKWQQNDPTVLDFRGLQALVIDNRSIRAEVTKYHLKRLGISVDIVSSLVSAHEYVKNNCIKSPSKSLAMVLIDKDVWDNQTGPTIARVFKEHGVNGKEESTQSPKIFLLATSDLQETRALKSTGYINNVMTKPLRLGVLIGCFQEAFGKVNRKKPSILGNLLREKQILVVDDNAVNRRVAEGALKKYGAKVTCVESGRAAISLLKPPHKFHACFMDLQMPEMDGFTATREIRNIEKKVNEDIASGKASSDMFGNVAVWHTPVLAMTADVIQATSEACMACGMDGYVAKPFEEEKLYSAVARFFESDGGTRI 1237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11820524 11830986 + Carg18068-RA Car11g01462 157415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01462 1237 Coils Coil 612 632 - -
Car11g01462 1237 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 747 914 IPR003594 -
Car11g01462 1237 Pfam Response regulator receiver domain 1093 1177 IPR001789 GO:0000160
Car11g01462 1237 Pfam His Kinase A (phospho-acceptor) domain 635 700 IPR003661 GO:0000155|GO:0007165
Car11g01462 1237 ProSiteProfiles Response regulatory domain profile. 943 1073 IPR001789 GO:0000160
Car11g01462 1237 ProSiteProfiles Response regulatory domain profile. 1092 1229 IPR001789 GO:0000160
Car11g01462 1237 ProSiteProfiles CHASE domain profile. 350 574 IPR006189 -
Car11g01462 1237 Pfam CHASE domain 353 547 IPR006189 -
Car11g01462 1237 ProSiteProfiles Histidine kinase domain profile. 642 919 IPR005467 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00626 Car-Chr7:3153535 Car11g01462 Car-Chr11:11820524 0 dispersed
Car08g00164 Car-Chr8:999747 Car11g01462 Car-Chr11:11820524 0 dispersed
Car11g01462 Car-Chr11:11820524 Car17g01329 Car-Chr17:9961941 0 dispersed
Car11g01462 Car-Chr11:11820524 Car20g00576 Car-Chr20:3233680 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4340 PF03924 CHASE 6.90E-36 CL0165 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01462 K14489 - tcc:18612437 1580.46