Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car11g01463 | ATGGTTTCTTCAGGGGACCAAATAGAGACTAAAGTTGATTCTGATAGATTGGAGCATGAACAAAGTTCATTTAGCCAATCGCAAGCGTCTCAGGAGGATCCTGGTGGAACTAATGCATCAAACTTTGATCACAAAAGCACTGCGGCTTCCAGGGAGACACTTGAAGAGGCTGTTAAGCAGCCTGACGTTACAATCCCACTAGTGGATCGAGGAGATATCTCTAATGTAGTGTCTGAGAAAGTGACCCAGAACCCAATTCATGCGGATCAGGACTCGCATCCTGACTTGAAAGTAAGTATCACCTCTACAATACGAGAGAAAGTGTCGGAGGATGGATATAACTGGCGAAAATATGGTCAGAAACTAGTAAAAGGAAATGTCTTTGTTAGAAGCTATTACAGATGCACGCATCCAACTTGCATGGTGAAAAAACAACTGGAGCGCACTCATGATGGGAAAATTACAGATATTATTTACTTTGGCCCGCACGATCACCCTAGACCTCAACCTCACATTCCTGTTGCTGTTGGAGTTGTTAACATGGTTGAAGAAAAACTAGATGATCATGCTTCCAGAAGTTCACAAGATAAGCCCTCCACTGCACTTGGCCAGACACCTCGTAAAACTGAGCCGGGTGATGCGCTTCAACTTTCATTAGACATGGCCAATGATAAGGAAAAAGAAGAAGCTTCGAAAAGGTCTAGGATCAATGATGAGGTGGACAGTGATGATACACGAGACTTGAAACGAGAGAAGAAAATATGTAATATTGACGTGACAGTAGCAGACAAGTCAACCGTTGAATCTCGTGTTGTTGTTCAAACTCCCAGTGAGGTTGACATTGTTAACGATGGATACCGCTGGCGGAAGTACGGACAGAAACTAGTGAAAGGCAATCCAAATCCTAGGACTGTGACGTTGAACTCAGCTGGGTCCACAGCAGCCCACAGTGATGAGATGAAAACAAAAACGGTCGGTAGTTCTATTGGCCAGGATACGGTGGTTCATGCTAATAAGGATCCTCCAAGCAATTCAAGTTCTGAAGACAAATTAATTGAAACGAATGGCAAGTCGAATGCCACAGAAGCAAGTGATAGAATTGTCCTCGACATGGTGGTATACCAGGCAAGGAGTTTCGAGTGCTCGAAATAA | 1152 | 43.84 | MVSSGDQIETKVDSDRLEHEQSSFSQSQASQEDPGGTNASNFDHKSTAASRETLEEAVKQPDVTIPLVDRGDISNVVSEKVTQNPIHADQDSHPDLKVSITSTIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDIIYFGPHDHPRPQPHIPVAVGVVNMVEEKLDDHASRSSQDKPSTALGQTPRKTEPGDALQLSLDMANDKEKEEASKRSRINDEVDSDDTRDLKREKKICNIDVTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRTVTLNSAGSTAAHSDEMKTKTVGSSIGQDTVVHANKDPPSNSSSEDKLIETNGKSNATEASDRIVLDMVVYQARSFECSK | 383 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 11830526 | 11834663 | - | Carg18067-RA | Car11g01463 | 157416 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car11g01463 | 383 | ProSiteProfiles | WRKY domain profile. | 277 | 341 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Car11g01463 | 383 | MobiDBLite | consensus disorder prediction | 325 | 362 | - | - | |
Car11g01463 | 383 | MobiDBLite | consensus disorder prediction | 187 | 246 | - | - | |
Car11g01463 | 383 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - | |
Car11g01463 | 383 | Pfam | WRKY DNA -binding domain | 283 | 303 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Car11g01463 | 383 | Pfam | WRKY DNA -binding domain | 110 | 166 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Car11g01463 | 383 | ProSiteProfiles | WRKY domain profile. | 104 | 168 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Car11g01463 | 383 | MobiDBLite | consensus disorder prediction | 21 | 47 | - | - | |
Car11g01463 | 383 | MobiDBLite | consensus disorder prediction | 220 | 246 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car11g01463 | Car-Chr11:11830526 | Car16g00907 | Car-Chr16:7429862 | 3.08E-13 | dispersed | |
Car11g01463 | Car-Chr11:11830526 | Car06g00588 | Car-Chr6:3389291 | 3.13E-13 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
4341 | PF03106 | WRKY | 2.70E-22 | CL0274 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car11g01463 | K18834 | - | csv:101212482 | 513.457 |