Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01463 ATGGTTTCTTCAGGGGACCAAATAGAGACTAAAGTTGATTCTGATAGATTGGAGCATGAACAAAGTTCATTTAGCCAATCGCAAGCGTCTCAGGAGGATCCTGGTGGAACTAATGCATCAAACTTTGATCACAAAAGCACTGCGGCTTCCAGGGAGACACTTGAAGAGGCTGTTAAGCAGCCTGACGTTACAATCCCACTAGTGGATCGAGGAGATATCTCTAATGTAGTGTCTGAGAAAGTGACCCAGAACCCAATTCATGCGGATCAGGACTCGCATCCTGACTTGAAAGTAAGTATCACCTCTACAATACGAGAGAAAGTGTCGGAGGATGGATATAACTGGCGAAAATATGGTCAGAAACTAGTAAAAGGAAATGTCTTTGTTAGAAGCTATTACAGATGCACGCATCCAACTTGCATGGTGAAAAAACAACTGGAGCGCACTCATGATGGGAAAATTACAGATATTATTTACTTTGGCCCGCACGATCACCCTAGACCTCAACCTCACATTCCTGTTGCTGTTGGAGTTGTTAACATGGTTGAAGAAAAACTAGATGATCATGCTTCCAGAAGTTCACAAGATAAGCCCTCCACTGCACTTGGCCAGACACCTCGTAAAACTGAGCCGGGTGATGCGCTTCAACTTTCATTAGACATGGCCAATGATAAGGAAAAAGAAGAAGCTTCGAAAAGGTCTAGGATCAATGATGAGGTGGACAGTGATGATACACGAGACTTGAAACGAGAGAAGAAAATATGTAATATTGACGTGACAGTAGCAGACAAGTCAACCGTTGAATCTCGTGTTGTTGTTCAAACTCCCAGTGAGGTTGACATTGTTAACGATGGATACCGCTGGCGGAAGTACGGACAGAAACTAGTGAAAGGCAATCCAAATCCTAGGACTGTGACGTTGAACTCAGCTGGGTCCACAGCAGCCCACAGTGATGAGATGAAAACAAAAACGGTCGGTAGTTCTATTGGCCAGGATACGGTGGTTCATGCTAATAAGGATCCTCCAAGCAATTCAAGTTCTGAAGACAAATTAATTGAAACGAATGGCAAGTCGAATGCCACAGAAGCAAGTGATAGAATTGTCCTCGACATGGTGGTATACCAGGCAAGGAGTTTCGAGTGCTCGAAATAA 1152 43.84 MVSSGDQIETKVDSDRLEHEQSSFSQSQASQEDPGGTNASNFDHKSTAASRETLEEAVKQPDVTIPLVDRGDISNVVSEKVTQNPIHADQDSHPDLKVSITSTIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDIIYFGPHDHPRPQPHIPVAVGVVNMVEEKLDDHASRSSQDKPSTALGQTPRKTEPGDALQLSLDMANDKEKEEASKRSRINDEVDSDDTRDLKREKKICNIDVTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRTVTLNSAGSTAAHSDEMKTKTVGSSIGQDTVVHANKDPPSNSSSEDKLIETNGKSNATEASDRIVLDMVVYQARSFECSK 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11830526 11834663 - Carg18067-RA Car11g01463 157416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01463 383 ProSiteProfiles WRKY domain profile. 277 341 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car11g01463 383 MobiDBLite consensus disorder prediction 325 362 - -
Car11g01463 383 MobiDBLite consensus disorder prediction 187 246 - -
Car11g01463 383 MobiDBLite consensus disorder prediction 1 63 - -
Car11g01463 383 Pfam WRKY DNA -binding domain 283 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car11g01463 383 Pfam WRKY DNA -binding domain 110 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car11g01463 383 ProSiteProfiles WRKY domain profile. 104 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car11g01463 383 MobiDBLite consensus disorder prediction 21 47 - -
Car11g01463 383 MobiDBLite consensus disorder prediction 220 246 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01463 Car-Chr11:11830526 Car16g00907 Car-Chr16:7429862 3.08E-13 dispersed
Car11g01463 Car-Chr11:11830526 Car06g00588 Car-Chr6:3389291 3.13E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4341 PF03106 WRKY 2.70E-22 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01463 K18834 - csv:101212482 513.457