Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01486 ATGTCTGAAGAGCAAACAATTTCAAATGCTTTCATTTGCAGCTTGCCAACACTTGGATCAAACAACAACCCTCCTGTTCTTAAGAAGAAGAGGAATCTCCCCGGAAATCCAGGCAAGAACAACCTTTATCCGAAGGCGGAAGTCGTGGCATTGTCGCCGAAGACCCTAATGGCGACGAACCGATTCTTGTGTGACATATGTGGGAAGGGTTTCCAGAGGGATCAGAACCTACAGCTGCATAGAAGAGGACACAATCTTCCATGGAAGCTGAAGCAAAGAAGCAACAGCAACAAAGAGCCAAGGAAGAGAGTTTATGTTTGTCCAGAGAAGAGCTGTGTGCACCACCATCCTTCAAGGGCGCTTGGAGACCTCACAGGCATTAAAAAGCACTTTTGCAGGAAGCATGGCGAGAAGAAGTGGAAGTGCGAGAAGTGCTCCAAGAAATATGCTGTGCAGTCAGATTGGAAAGCACACTCCAAAACTTGTGGCACCAAAGAGTATAAATGTGACTGTGGAACTCCATTTTCAAGCCGTGGGCTTTGGCTGTTACAAATGGTATTTGAGTCAGGCACCGAACTGTGTGCCGGTGAGGACGCTCGACCCTCAAGAGGGGTGGATCACTGGATTGTGAGATCTCAGGGGAAAAACCCAGAGAAGATAATATTTGCTAGCGGTGGTGGGAGAGACAGGAGAGATAGCTATGTAACTCACAGAGCATACTGCATGGCCTTAGCAGAGGAAACAGCAAGACTAAACGCAGCAGCATCAACCATGAACACAGCTGACAACAGCTACCATTTCCTAAGACCCAACACAGAGCCTCACCAATACTTTCCCTCCTCCACCTTTTTCAGACAAGATCATGAAACTTCTCAAATGTTCCTCAACAACAACGTTAATTCCCTCACACCCACAATAGCCTTCCCTTTTTGGATGCCAAATTCTTCCCCCCAAGACAATAATTTCCATCACCCACTTGCACCACCACCACCACCGCCGCCGCCACCACCACCAACAGCAACAACAACAAGCTGTCTTCTTTCAGTTCCTTCCTTGTACAGCCACGAAGAACAAGCCAATCAAGCAATGGCATCATCATCATCAGCAGCAGCAGCAGCAGCCAACATGTCAGCCACTGTTCTGCTACAAAAGGCTGCTGAAATGGCAGTGACAAGCTCCACAACAACAGACCCATCATCATTAATGGCAAGTTTTGGGTTGAAATTCAGTGCCACAACTGATGGGAAAGCCTTGTTTTCAGGGCTTTATGGCTCAATTAACTCAAATTCCATTCCTAGTTGTTGCAGCCTTGAAAATGGTGGCGATCATCAAGACTCTGCTGCTAGTAACTTGATCCAAATGTACCCTGCTGCAAAGAGAATTAGACACACTGTTAGTGAAGAAAGTGTCACGGGTGGAGAAGGAGAAACAAGGGATTTCTTGGGTGTGGGAATCCCCACCATATGCCATCATCCATCAGCAGTGAATGGATGGATGTGA 1500 47.13 MSEEQTISNAFICSLPTLGSNNNPPVLKKKRNLPGNPGKNNLYPKAEVVALSPKTLMATNRFLCDICGKGFQRDQNLQLHRRGHNLPWKLKQRSNSNKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCDCGTPFSSRGLWLLQMVFESGTELCAGEDARPSRGVDHWIVRSQGKNPEKIIFASGGGRDRRDSYVTHRAYCMALAEETARLNAAASTMNTADNSYHFLRPNTEPHQYFPSSTFFRQDHETSQMFLNNNVNSLTPTIAFPFWMPNSSPQDNNFHHPLAPPPPPPPPPPPTATTTSCLLSVPSLYSHEEQANQAMASSSSAAAAAANMSATVLLQKAAEMAVTSSTTTDPSSLMASFGLKFSATTDGKALFSGLYGSINSNSIPSCCSLENGGDHQDSAASNLIQMYPAAKRIRHTVSEESVTGGEGETRDFLGVGIPTICHHPSAVNGWM 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11999270 12001987 - Carg18043-RA Car11g01486 157439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01486 499 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Car11g01486 499 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Car11g01486 499 MobiDBLite consensus disorder prediction 319 343 - -
Car11g01486 499 MobiDBLite consensus disorder prediction 323 341 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00606 Car-Chr7:3065072 Car11g01486 Car-Chr11:11999270 3.87E-107 dispersed
Car11g01486 Car-Chr11:11999270 Car16g00684 Car-Chr16:4345668 3.96E-84 dispersed
Car11g01486 Car-Chr11:11999270 Car01g01477 Car-Chr1:12613645 7.67E-86 transposed
Car11g01486 Car-Chr11:11999270 Car08g00290 Car-Chr8:1858058 3.45E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4342 None None None None Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01486 K25870 - csv:101207997 542.732