Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car11g01493 | ATGGACCGTGGCTTGATCATGTTCGATCATAACAACAACAACGACAACAACAACGACAGCGATAGCAACAACAGGAAGATGTTTTTGCCTTACAATGATCATGTTGAAACTTGTAGAGCTAAACTTATGGCTCATCCGTTGTTTCCTCGTCTATTGGCTTCCTATGTGAATTGTCAGAAGGTGGGTGCGCCGCCGGATGTGGTGGCGAGGTTAGAACAGGCTTGTACGGTGGCTGCTGGGAATTGTAGGACGGTGGCACGTGGGGATGATCCGGGGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGAGTAAATATGAACAAGAGCTTACTAAGCCTTTTAAAGAAGCTATGGTGTTCTTTTCGAGGATTGAGTCTCAGCTTAAAGCCCTAGCTGCTTCCTCTTCTTCTTCGGATGGTTATGAGCTGGTCGGGCAAAACGAGTGTTCGAAGGAGATCGAGGTTGTCGATATGAACGAAAACTACATCGACCCACAAGCCGAAGAGAAGGAACTCAAAGGCCAACTTCTACGCAAATATAGCGGATACCTCGGTAGCCTAAAGCAAGAGTTTCTCAAGAAGAAGAAGAATGGGAAGTTGCCTAAAGAAGCTCGGCAGCAGCTGCTTGACTGGTGGAGTAGACACTACAAATGGCCATATCCATCGGAGTCGCAAAAGGTGGCGTTGGCCGAGTCGACGGGACTGGACTTGAAGCAGATCAATAATTGGTTCATTAACCAAAGGAAGCGCCATTGGAAGCCATCGGAGGACATGCAGTTTGTGGTGATGGATGCTGCTCATCCACACTACTATTTGGATAATCTTATATGCAATCCATTCTCAATGGACTGTTCTTCCACTCTCTTCTGA | 873 | 46.74 | MDRGLIMFDHNNNNDNNNDSDSNNRKMFLPYNDHVETCRAKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF | 290 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12047728 | 12051557 | + | Carg27156-RA | Car11g01493 | 157446 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car11g01493 | 290 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Car11g01493 | 290 | Pfam | ELK domain | 172 | 193 | IPR005539 | GO:0003677 | |
Car11g01493 | 290 | ProSitePatterns | 'Homeobox' domain signature. | 230 | 253 | IPR017970 | GO:0000981|GO:0006355 | |
Car11g01493 | 290 | MobiDBLite | consensus disorder prediction | 9 | 24 | - | - | |
Car11g01493 | 290 | ProSiteProfiles | ELK domain profile. | 172 | 192 | IPR005539 | GO:0003677 | |
Car11g01493 | 290 | ProSiteProfiles | 'Homeobox' domain profile. | 192 | 255 | IPR001356 | GO:0003677 | |
Car11g01493 | 290 | Pfam | KNOX1 domain | 39 | 75 | IPR005540 | GO:0003677|GO:0005634 | |
Car11g01493 | 290 | Pfam | KNOX2 domain | 88 | 132 | IPR005541 | GO:0003677|GO:0005634 | |
Car11g01493 | 290 | Pfam | Homeobox KN domain | 212 | 251 | IPR008422 | GO:0003677|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car11g01493 | Car20g00184 | CCT | |
Car02g00071 | Car11g01493 | CCT | |
Car02g00071 | Car11g01493 | ECH | |
Car11g01493 | Car20g00184 | ECH | |
Car11g01493 | Car19g00804 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car01g01369 | Car-Chr1:12038100 | Car11g01493 | Car-Chr11:12047728 | 7.56E-84 | dispersed | |
Car05g00098 | Car-Chr5:503872 | Car11g01493 | Car-Chr11:12047728 | 4.76E-71 | dispersed | |
Car09g00271 | Car-Chr9:1479832 | Car11g01493 | Car-Chr11:12047728 | 9.54E-83 | dispersed | |
Car11g01493 | Car-Chr11:12047728 | Car12g00568 | Car-Chr12:3802660 | 1.24E-70 | dispersed | |
Car11g01493 | Car-Chr11:12047728 | Car03g00507 | Car-Chr3:5161523 | 3.06E-115 | wgd | |
Car11g01493 | Car-Chr11:12047728 | Car07g00281 | Car-Chr7:1472443 | 1.17E-103 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
4344 | PF03791 | KNOX2 | 2.50E-22 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car11g01493 | - | - | cpep:111792192 | 548.125 |