Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01493 ATGGACCGTGGCTTGATCATGTTCGATCATAACAACAACAACGACAACAACAACGACAGCGATAGCAACAACAGGAAGATGTTTTTGCCTTACAATGATCATGTTGAAACTTGTAGAGCTAAACTTATGGCTCATCCGTTGTTTCCTCGTCTATTGGCTTCCTATGTGAATTGTCAGAAGGTGGGTGCGCCGCCGGATGTGGTGGCGAGGTTAGAACAGGCTTGTACGGTGGCTGCTGGGAATTGTAGGACGGTGGCACGTGGGGATGATCCGGGGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGAGTAAATATGAACAAGAGCTTACTAAGCCTTTTAAAGAAGCTATGGTGTTCTTTTCGAGGATTGAGTCTCAGCTTAAAGCCCTAGCTGCTTCCTCTTCTTCTTCGGATGGTTATGAGCTGGTCGGGCAAAACGAGTGTTCGAAGGAGATCGAGGTTGTCGATATGAACGAAAACTACATCGACCCACAAGCCGAAGAGAAGGAACTCAAAGGCCAACTTCTACGCAAATATAGCGGATACCTCGGTAGCCTAAAGCAAGAGTTTCTCAAGAAGAAGAAGAATGGGAAGTTGCCTAAAGAAGCTCGGCAGCAGCTGCTTGACTGGTGGAGTAGACACTACAAATGGCCATATCCATCGGAGTCGCAAAAGGTGGCGTTGGCCGAGTCGACGGGACTGGACTTGAAGCAGATCAATAATTGGTTCATTAACCAAAGGAAGCGCCATTGGAAGCCATCGGAGGACATGCAGTTTGTGGTGATGGATGCTGCTCATCCACACTACTATTTGGATAATCTTATATGCAATCCATTCTCAATGGACTGTTCTTCCACTCTCTTCTGA 873 46.74 MDRGLIMFDHNNNNDNNNDSDSNNRKMFLPYNDHVETCRAKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12047728 12051557 + Carg27156-RA Car11g01493 157446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01493 290 MobiDBLite consensus disorder prediction 1 24 - -
Car11g01493 290 Pfam ELK domain 172 193 IPR005539 GO:0003677
Car11g01493 290 ProSitePatterns 'Homeobox' domain signature. 230 253 IPR017970 GO:0000981|GO:0006355
Car11g01493 290 MobiDBLite consensus disorder prediction 9 24 - -
Car11g01493 290 ProSiteProfiles ELK domain profile. 172 192 IPR005539 GO:0003677
Car11g01493 290 ProSiteProfiles 'Homeobox' domain profile. 192 255 IPR001356 GO:0003677
Car11g01493 290 Pfam KNOX1 domain 39 75 IPR005540 GO:0003677|GO:0005634
Car11g01493 290 Pfam KNOX2 domain 88 132 IPR005541 GO:0003677|GO:0005634
Car11g01493 290 Pfam Homeobox KN domain 212 251 IPR008422 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g01493 Car20g00184 CCT
Car02g00071 Car11g01493 CCT
Car02g00071 Car11g01493 ECH
Car11g01493 Car20g00184 ECH
Car11g01493 Car19g00804 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01369 Car-Chr1:12038100 Car11g01493 Car-Chr11:12047728 7.56E-84 dispersed
Car05g00098 Car-Chr5:503872 Car11g01493 Car-Chr11:12047728 4.76E-71 dispersed
Car09g00271 Car-Chr9:1479832 Car11g01493 Car-Chr11:12047728 9.54E-83 dispersed
Car11g01493 Car-Chr11:12047728 Car12g00568 Car-Chr12:3802660 1.24E-70 dispersed
Car11g01493 Car-Chr11:12047728 Car03g00507 Car-Chr3:5161523 3.06E-115 wgd
Car11g01493 Car-Chr11:12047728 Car07g00281 Car-Chr7:1472443 1.17E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4344 PF03791 KNOX2 2.50E-22 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01493 - - cpep:111792192 548.125