Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01502 ATGGAAGCCGCCGCCCCTTCTCCTCCTCCTCCTCCTCCCCCCACCGCTACCCTCCACTTTCCGGTCAACCTCAACTCCACCCTCCACGAACCTCCTCCCTCTCCTCCCCCCTCTCCTCCTCCCTCTCCCCCTCCCCCACCGCCCTTCTTCCACTCTCACCGCGCCCTCTTCGACGAAATGAACTTCTTCGCCGCCGATGATAAATCCCGCGTTCTTATCTCCGCCGCTGACTCCAAACTCCGTGCCTCCGACAACCTCAGTCCCACCAAGCTCGAATTTCAAGTAAATGTAGGTCATCCACTGAATTTTCTGACTGGGTTGAATCTGTTGACCACGAATTACAGTAGCGATCAATCCATGGTGGACGATGGAATTTCATCGAACCCACAAGACACAAAAACAAAAAACGAGAGAGCAGTTCTTCAAGCTGAATTGGAGAGAGTGAACACAGAGAATCAACGGTTAAAAGACACGTTAAATCAAGTCACCAGCAATTACCAATCGCTGCAGATGCAGTTCACAACGCTAATTCAAACCCAGAAGGCAGCCGACGCCGGCGATTCAACTGACGAGAAGGCCGGCGACCAAGAAACGATCCGACACGGCGGTGGCGGAGCGAATAATGGTAATAAGCTGGTGCCGAGGCAGTTTATGGATCTTGGATTGGCTACGAATGCGGACATCGATGAGCCATCGATGTCGTCGTCGGAAGGGAGGAGTGATCGGTCGCCGGGTACCACCGGAGAAGTGGCATCGTCAAAACGACATAGCCCAGATCAAGGTTCGAATTTGGGTTCAAACAAGGCTTCTAAATTCAGTTCTTCGTCCTCGAGTAAAGACGTGGATCAAACTGAAGCTACTATGAGAAAAGCTCGAGTCTCCGTTCGAGCTAGATCGGAAGCACCCATGATAACGGACGGATGTCAATGGCGAAAATACGGACAAAAAATGGCTAAGGGAAACCCTTGTCCTCGAGCTTACTATCGATGCACCATGGCCGCCGGTTGCCCCGTTCGGAAACAAGTACAAAGATGTGCAGAAGACAAGACAATTTTGATAACAACGTACGAAGGCAATCACAACCATCCATTGCCGCCGGCCGCCATGGCAATGGCATCAACAACATCATCAGCGGCTAGAATGCTTCTATCAGGCTCCATGTCAAGTGCCGACGGTTTAATGAACCCAAATTTTCTAGCAAGAACCCTATTGCCATGTTCTTCAAGCATGGCTACAATCTCGGCCTCGGCCCCATTTCCGACGGTCACATTAGACCTAACACAAACCCCGAACCCTTTATTCCAACGACCCGCACCGGGTCACTTCCCGATCCCGTTCGCAGCCGGTCCGACTCAAAGCTTCCCACAAATTTTTGGACATGCCCTATACAATCAATCAAAATTCTCCGGCCTCCAAATGTCCAAGGAGATAGAAGCGCCTACGCCTCCTCCTCCGTCGCAAAATCCATTGACCGACACGTTGAGCGCGGCGAGTGCGGCGATCGCTTCCGACCCGAATTTCATTGCGGCGTTGGCTTCGGCTATGACGTCGTTGATCGGCGGATCGCATCATCAAAAGGAGAATGGAAATGGGAATGGGAATAATAATAATGTGGACAATAACACAACAAGCAACTCCCAACAGTAA 1647 51.49 MEAAAPSPPPPPPPTATLHFPVNLNSTLHEPPPSPPPSPPPSPPPPPPFFHSHRALFDEMNFFAADDKSRVLISAADSKLRASDNLSPTKLEFQVNVGHPLNFLTGLNLLTTNYSSDQSMVDDGISSNPQDTKTKNERAVLQAELERVNTENQRLKDTLNQVTSNYQSLQMQFTTLIQTQKAADAGDSTDEKAGDQETIRHGGGGANNGNKLVPRQFMDLGLATNADIDEPSMSSSEGRSDRSPGTTGEVASSKRHSPDQGSNLGSNKASKFSSSSSSKDVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMSSADGLMNPNFLARTLLPCSSSMATISASAPFPTVTLDLTQTPNPLFQRPAPGHFPIPFAAGPTQSFPQIFGHALYNQSKFSGLQMSKEIEAPTPPPPSQNPLTDTLSAASAAIASDPNFIAALASAMTSLIGGSHHQKENGNGNGNNNNVDNNTTSNSQQ 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12089406 12091903 + Carg27147-RA Car11g01502 157455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01502 548 ProSiteProfiles WRKY domain profile. 299 365 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car11g01502 548 Coils Coil 138 172 - -
Car11g01502 548 MobiDBLite consensus disorder prediction 28 50 - -
Car11g01502 548 Pfam WRKY DNA -binding domain 306 363 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car11g01502 548 MobiDBLite consensus disorder prediction 227 298 - -
Car11g01502 548 MobiDBLite consensus disorder prediction 521 548 - -
Car11g01502 548 MobiDBLite consensus disorder prediction 1 50 - -
Car11g01502 548 MobiDBLite consensus disorder prediction 1 18 - -
Car11g01502 548 MobiDBLite consensus disorder prediction 184 212 - -
Car11g01502 548 MobiDBLite consensus disorder prediction 228 282 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g01502 Car19g00707 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00477 Car-Chr4:2691497 Car11g01502 Car-Chr11:12089406 5.35E-54 dispersed
Car10g00169 Car-Chr10:815310 Car11g01502 Car-Chr11:12089406 9.18E-61 dispersed
Car11g00139 Car-Chr11:785975 Car11g01502 Car-Chr11:12089406 2.83E-55 dispersed
Car11g01502 Car-Chr11:12089406 Car16g00329 Car-Chr16:2017973 3.00E-49 dispersed
Car11g01502 Car-Chr11:12089406 Car19g00707 Car-Chr19:8146244 6.70E-158 wgd
Car11g01502 Car-Chr11:12089406 Car03g00498 Car-Chr3:5123695 2.24E-12 wgd
Car11g01502 Car-Chr11:12089406 Car07g00275 Car-Chr7:1454524 1.57E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4346 PF03106 WRKY 2.50E-24 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01502 - - cmos:111437115 934.865