Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car11g01502 | ATGGAAGCCGCCGCCCCTTCTCCTCCTCCTCCTCCTCCCCCCACCGCTACCCTCCACTTTCCGGTCAACCTCAACTCCACCCTCCACGAACCTCCTCCCTCTCCTCCCCCCTCTCCTCCTCCCTCTCCCCCTCCCCCACCGCCCTTCTTCCACTCTCACCGCGCCCTCTTCGACGAAATGAACTTCTTCGCCGCCGATGATAAATCCCGCGTTCTTATCTCCGCCGCTGACTCCAAACTCCGTGCCTCCGACAACCTCAGTCCCACCAAGCTCGAATTTCAAGTAAATGTAGGTCATCCACTGAATTTTCTGACTGGGTTGAATCTGTTGACCACGAATTACAGTAGCGATCAATCCATGGTGGACGATGGAATTTCATCGAACCCACAAGACACAAAAACAAAAAACGAGAGAGCAGTTCTTCAAGCTGAATTGGAGAGAGTGAACACAGAGAATCAACGGTTAAAAGACACGTTAAATCAAGTCACCAGCAATTACCAATCGCTGCAGATGCAGTTCACAACGCTAATTCAAACCCAGAAGGCAGCCGACGCCGGCGATTCAACTGACGAGAAGGCCGGCGACCAAGAAACGATCCGACACGGCGGTGGCGGAGCGAATAATGGTAATAAGCTGGTGCCGAGGCAGTTTATGGATCTTGGATTGGCTACGAATGCGGACATCGATGAGCCATCGATGTCGTCGTCGGAAGGGAGGAGTGATCGGTCGCCGGGTACCACCGGAGAAGTGGCATCGTCAAAACGACATAGCCCAGATCAAGGTTCGAATTTGGGTTCAAACAAGGCTTCTAAATTCAGTTCTTCGTCCTCGAGTAAAGACGTGGATCAAACTGAAGCTACTATGAGAAAAGCTCGAGTCTCCGTTCGAGCTAGATCGGAAGCACCCATGATAACGGACGGATGTCAATGGCGAAAATACGGACAAAAAATGGCTAAGGGAAACCCTTGTCCTCGAGCTTACTATCGATGCACCATGGCCGCCGGTTGCCCCGTTCGGAAACAAGTACAAAGATGTGCAGAAGACAAGACAATTTTGATAACAACGTACGAAGGCAATCACAACCATCCATTGCCGCCGGCCGCCATGGCAATGGCATCAACAACATCATCAGCGGCTAGAATGCTTCTATCAGGCTCCATGTCAAGTGCCGACGGTTTAATGAACCCAAATTTTCTAGCAAGAACCCTATTGCCATGTTCTTCAAGCATGGCTACAATCTCGGCCTCGGCCCCATTTCCGACGGTCACATTAGACCTAACACAAACCCCGAACCCTTTATTCCAACGACCCGCACCGGGTCACTTCCCGATCCCGTTCGCAGCCGGTCCGACTCAAAGCTTCCCACAAATTTTTGGACATGCCCTATACAATCAATCAAAATTCTCCGGCCTCCAAATGTCCAAGGAGATAGAAGCGCCTACGCCTCCTCCTCCGTCGCAAAATCCATTGACCGACACGTTGAGCGCGGCGAGTGCGGCGATCGCTTCCGACCCGAATTTCATTGCGGCGTTGGCTTCGGCTATGACGTCGTTGATCGGCGGATCGCATCATCAAAAGGAGAATGGAAATGGGAATGGGAATAATAATAATGTGGACAATAACACAACAAGCAACTCCCAACAGTAA | 1647 | 51.49 | MEAAAPSPPPPPPPTATLHFPVNLNSTLHEPPPSPPPSPPPSPPPPPPFFHSHRALFDEMNFFAADDKSRVLISAADSKLRASDNLSPTKLEFQVNVGHPLNFLTGLNLLTTNYSSDQSMVDDGISSNPQDTKTKNERAVLQAELERVNTENQRLKDTLNQVTSNYQSLQMQFTTLIQTQKAADAGDSTDEKAGDQETIRHGGGGANNGNKLVPRQFMDLGLATNADIDEPSMSSSEGRSDRSPGTTGEVASSKRHSPDQGSNLGSNKASKFSSSSSSKDVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMSSADGLMNPNFLARTLLPCSSSMATISASAPFPTVTLDLTQTPNPLFQRPAPGHFPIPFAAGPTQSFPQIFGHALYNQSKFSGLQMSKEIEAPTPPPPSQNPLTDTLSAASAAIASDPNFIAALASAMTSLIGGSHHQKENGNGNGNNNNVDNNTTSNSQQ | 548 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12089406 | 12091903 | + | Carg27147-RA | Car11g01502 | 157455 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car11g01502 | 548 | ProSiteProfiles | WRKY domain profile. | 299 | 365 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Car11g01502 | 548 | Coils | Coil | 138 | 172 | - | - | |
Car11g01502 | 548 | MobiDBLite | consensus disorder prediction | 28 | 50 | - | - | |
Car11g01502 | 548 | Pfam | WRKY DNA -binding domain | 306 | 363 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Car11g01502 | 548 | MobiDBLite | consensus disorder prediction | 227 | 298 | - | - | |
Car11g01502 | 548 | MobiDBLite | consensus disorder prediction | 521 | 548 | - | - | |
Car11g01502 | 548 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
Car11g01502 | 548 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Car11g01502 | 548 | MobiDBLite | consensus disorder prediction | 184 | 212 | - | - | |
Car11g01502 | 548 | MobiDBLite | consensus disorder prediction | 228 | 282 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car11g01502 | Car19g00707 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car04g00477 | Car-Chr4:2691497 | Car11g01502 | Car-Chr11:12089406 | 5.35E-54 | dispersed | |
Car10g00169 | Car-Chr10:815310 | Car11g01502 | Car-Chr11:12089406 | 9.18E-61 | dispersed | |
Car11g00139 | Car-Chr11:785975 | Car11g01502 | Car-Chr11:12089406 | 2.83E-55 | dispersed | |
Car11g01502 | Car-Chr11:12089406 | Car16g00329 | Car-Chr16:2017973 | 3.00E-49 | dispersed | |
Car11g01502 | Car-Chr11:12089406 | Car19g00707 | Car-Chr19:8146244 | 6.70E-158 | wgd | |
Car11g01502 | Car-Chr11:12089406 | Car03g00498 | Car-Chr3:5123695 | 2.24E-12 | wgd | |
Car11g01502 | Car-Chr11:12089406 | Car07g00275 | Car-Chr7:1454524 | 1.57E-138 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
4346 | PF03106 | WRKY | 2.50E-24 | CL0274 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car11g01502 | - | - | cmos:111437115 | 934.865 |