Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01503 ATGACCTGGATCCGACTCGCCGCCGTCGGCCACGGCTCCTCCGCCACCGTCTACCTTGCCTCCGCCGCCCCTGCCGGAGACGTTTTTGCTGTCAAGTCCGCCGAGCTTCCCGAATCGGAGTTCTTGAAAACAGAGCAGAGGATTCTTTCTTCTTTGTCCCACCCTTCCATTGTGAGCTACAGGGGATTCGATGTAACGAGAGAGAATGGGAAGCTGATGTATAATCTCTTCATGGAGTACGCCACCGGAGGTACACTCGCCGACGAAATTCTCCGGTGCGGCGGCTGGATTAAAGAGACGGCGGCGGGATTCTACACGCGTGAAATTGTGAAAGGATTGGAGTATTTGCACAAAAGGGGTTTGGTGCATTGTGATATTAAAGCTAAGAATATTTTAATCGGGGAAGATGGTTTGAAGATCGCGGATTTCGGATGCTCGAAATGGGTTAATGAACCGGCGGCTATCGGTGGAACGCCGATGTTCATGGCGCCGGAAGTAGCACGTGGGGAAAAACAGGGGATTTCCTCTGACATTTGGTCACTTGGGTGTACTTTAATCGAAATGGTCAACGGTGCTCCACCGTGGCCAACCGACGGCGACCCAGTTTCAGTACTGTACCGGATAGGATATTCCGGCGAGTCGCCAGAAATTCCAAGCTTTCTATCGGAGAAAGCGAAGGATTTTCTTGGAAAATGCTTGAGAAGAAACCCAACAGAACGCTGGAGCGCGAGCCAGCTTCTTGAACATCCATTCTTAGAGGACACGAATTCTGAGTGGTTCGAGGAATCCAAGGAATTAGATTCAAATTCTCCGACAAGTATCTTGGATCAAGGCGTTTGGAATTCGCAAAGTGAGCTGAAAACAGAGGAATGGGACGACGACAGAATCAGACGGCTGTCGATGTTCCGATGGGAAATCAAGTGGGAATCGGACGGTGAGAATTGGATGACGATCAGAGGAAGGTGCGTGGACGGTGAAGATGAGGCGGAATCCATTAGTGGGCAAACCAAAAGCTTGGAATTGTTTGATAGAACAGTTAGGTTTAGAGTAAGTGATGATGTAATTAGTGATCTTGTTTCATTAATTAGTTGA 1092 49.27 MTWIRLAAVGHGSSATVYLASAAPAGDVFAVKSAELPESEFLKTEQRILSSLSHPSIVSYRGFDVTRENGKLMYNLFMEYATGGTLADEILRCGGWIKETAAGFYTREIVKGLEYLHKRGLVHCDIKAKNILIGEDGLKIADFGCSKWVNEPAAIGGTPMFMAPEVARGEKQGISSDIWSLGCTLIEMVNGAPPWPTDGDPVSVLYRIGYSGESPEIPSFLSEKAKDFLGKCLRRNPTERWSASQLLEHPFLEDTNSEWFEESKELDSNSPTSILDQGVWNSQSELKTEEWDDDRIRRLSMFRWEIKWESDGENWMTIRGRCVDGEDEAESISGQTKSLELFDRTVRFRVSDDVISDLVSLIS 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12119711 12120802 + Carg27544-RA Car11g01503 157456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01503 363 ProSiteProfiles Protein kinase domain profile. 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car11g01503 363 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Car11g01503 363 Pfam Protein kinase domain 6 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car11g01503 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g01503 Car20g00544 CCT
Car02g00150 Car11g01503 CCT
Car02g00150 Car11g01503 ECH
Car11g01503 Car20g00544 ECH
Car11g01503 Car19g00708 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00877 Car-Chr9:5372008 Car11g01503 Car-Chr11:12119711 8.21E-103 dispersed
Car11g01503 Car-Chr11:12119711 Car19g00708 Car-Chr19:8148277 0 wgd
Car11g01503 Car-Chr11:12119711 Car02g00150 Car-Chr2:851898 1.29E-131 wgd
Car11g01503 Car-Chr11:12119711 Car20g00544 Car-Chr20:2991302 4.05E-128 wgd
Car11g01503 Car-Chr11:12119711 Car03g00496 Car-Chr3:5114316 1.57E-102 wgd
Car11g01503 Car-Chr11:12119711 Car07g00274 Car-Chr7:1447122 1.33E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89203 PF00069 Pkinase 1.60E-56 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01503 K20716 - csv:101205351 500.36