Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01520 ATGCCAGCCGGAATGATGATTCCAGCCAGAAATGCGCCGTCGATGATCGGAAGAAATGGGAATGTCGGTGTTTTTGGCTCTCCGGCGAGCCTTGTTCTTGGTCAGGCAAATATGATGGAAGGGGCGCAGCTACATGCATTAGACATGCCACAAAGCGGTTTGCCAGACAGCGATTATGGGGTGATGAAAGAAGCAGAGGACTTCGACAGTGCCACTAAATCAAGCAGCGAGAACCACGAGGTTGGCTCTGGTGACGACCAAGACCACCGCCAACGCTCCAAGAAGAAGCGTTACCACCGCCACACTCAGCACCAGATCCAACAAATGGAAGCGTTCTTTAAGGAGTGTCCTCACCCAGATGACAAGCAAAGGAAGGAGCTAAGTAGGGAGCTGGGTTTAGAGCCATTGCAAGTCAAATTTTGGTTCCAAAACAAGCGAACTCAGATGAAGACTCATCACGAGCGACATGAGAACACTCACCTCCGAACACAAAACGAAAAGCTTAGAGCCGATAATATGAGGTATCGAGAAGCGCTCAGTAATGCGACGTGCCCCAATTGTGGAGGCCCGACCGCCATCGGAGAAATGTCGTTTGATGAACATCATCTCAGGCTCGAAAATGCCCGCTTAAGAGAAGAGATCGATCGCATTTCAGCCATAGCAGCAAAGTACGTAGGAAAGCCAGTTTCAAGCTTCCCTCTTCTTTCCCCATCAATTCCCACACATCCTCTAGAGCTCGGAATGGGCAGCTATGGAGCCGACATGTTCGGGGCGGCCGACCTTCTAAGGACGATAACCACGCCGTCGGAGGCCGACAAGCCGATGATCATCGAGCTGGCGGTTGCAGCCATGGAGGAACTAATCCGAATGGCTCAAATGGGCGAGCCCTTGTGGATGACAGCCCTTGATGGCTCAACCACACTGCTTAACCCAGATGAATATGTCCGAACCTTCCCTAGAGGAATCGGACCCAAACCCACCGGGTTTAGCACCGAAGCGTCTCGAGCCACCGCTGTCGTCGTCATGAACCATATCAGCCTCGTGGAGATGCTCATGGACGTGAATCAGTGGTCGGCCGTATTCACTGGGATTGTCTCGAGGGCTACGACATTGGAGATTCTGTCCACCGGCGTTGCCGGTAACTACGACGGTGCATTACAAGTGATGGCGTCGGAATTGCAAGTGCCATCGCCGCTTGTTCCGACTCGGGAGAGCTACTTTGTGAGGTACTGTAAGCAACATGGCGAGGGAACATGGGCTGTGGTGGACGTGTCGTTGGATAATTTACGCCCTGCTCCTGCGCTTCGATGTAGAAGAAGGCCTTCCGGATGTTTGATCCAAGAAATGCCTCAAGGCTATTCTAAGGTTACGTGGGTTGAGCATGTTGAGGTGGATGATCGAGGGATTCATAGTTTATACAATCAACTTGTTAGATCTGGCCACGCCTTCGGTGCAAAGCGTTGGATCGCCACGTTGGATCGTCAGTGTGAACGTCTTGCTAGTGCCATGACGATGAGTATTCCGAACGATGATGCCGGTGTGATAATGAATCAAGAAGGAAGAAAGAGCATGCTGAAGCTAGCAGAGAGAATGGTGATGAGCTTTTGCGGCGGAGTGAGCGCGTCTACCGCGCACACGTGGACAACACTGTCAGGAACGGGAGCCGATGATGTCAGAGTCATGACACGTAAGAGCATAGACGATCCCGGCAGACCACCTGGCATTGTCCTCAGCGCCGCCACTTCCTTCTGGCTCCCTGTTCCTCCTAAGAGAGTCTTCGACTTTCTCAGAGATGAAAATTCTCGTAACGAGTGGGATATTCTATCGAACGGTGGAGTTGTACAAGAAATGGCCCACATTGCCAATGGTCGTGACACGGGCAACTCGGTCTCATTGCTACGAGTAAATAGTCCAAATTCAAGTCAAAGCAACATGTTGATATTACAAGAGAACATCACGGATCAAACCGCCGCGTTTGTGATCTACGCTCCAGTAGACATTGTGGCCATCAACGTGGTACTAAACGGTGGCGATCCCGATTACGTCGCCCTTCTCCCCTCTGGATTTGCCATTCTTCCCGACGGAACCGCCGCGTCCAACGACAGCGCTAACAACATCATGGAACATGGCTCGGGTGGGTCGCTGTTAACCGTTGCATTTCAGATCTTGGTCGACTCGATTCCGACGGCTAAACTATCACTTGGGTCGGTAGCAACGGTTAACAACCTGATTGCTTGTACTGTGGAGAGGATTAGAGCCTCTCTTTCGTGTGAGAATCCATGA 2283 51.64 MPAGMMIPARNAPSMIGRNGNVGVFGSPASLVLGQANMMEGAQLHALDMPQSGLPDSDYGVMKEAEDFDSATKSSSENHEVGSGDDQDHRQRSKKKRYHRHTQHQIQQMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTHHERHENTHLRTQNEKLRADNMRYREALSNATCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVSSFPLLSPSIPTHPLELGMGSYGADMFGAADLLRTITTPSEADKPMIIELAVAAMEELIRMAQMGEPLWMTALDGSTTLLNPDEYVRTFPRGIGPKPTGFSTEASRATAVVVMNHISLVEMLMDVNQWSAVFTGIVSRATTLEILSTGVAGNYDGALQVMASELQVPSPLVPTRESYFVRYCKQHGEGTWAVVDVSLDNLRPAPALRCRRRPSGCLIQEMPQGYSKVTWVEHVEVDDRGIHSLYNQLVRSGHAFGAKRWIATLDRQCERLASAMTMSIPNDDAGVIMNQEGRKSMLKLAERMVMSFCGGVSASTAHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNSVSLLRVNSPNSSQSNMLILQENITDQTAAFVIYAPVDIVAINVVLNGGDPDYVALLPSGFAILPDGTAASNDSANNIMEHGSGGSLLTVAFQILVDSIPTAKLSLGSVATVNNLIACTVERIRASLSCENP 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12241544 12245692 + Carg19076-RA Car11g01520 157473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01520 760 MobiDBLite consensus disorder prediction 66 92 - -
Car11g01520 760 ProSitePatterns 'Homeobox' domain signature. 127 150 IPR017970 GO:0000981|GO:0006355
Car11g01520 760 Coils Coil 158 178 - -
Car11g01520 760 ProSiteProfiles START domain profile. 269 501 IPR002913 GO:0008289
Car11g01520 760 MobiDBLite consensus disorder prediction 66 104 - -
Car11g01520 760 Pfam Homeodomain 95 150 IPR001356 GO:0003677
Car11g01520 760 Pfam START domain 279 498 IPR002913 GO:0008289
Car11g01520 760 ProSiteProfiles 'Homeobox' domain profile. 92 152 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g01520 Car20g00526 CCT
Car02g00137 Car11g01520 CCT
Car11g01520 Car20g00526 ECH
Car02g00137 Car11g01520 ECH
Car11g01520 Car19g00719 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01520 Car-Chr11:12241544 Car17g00018 Car-Chr17:71992 0 dispersed
Car11g01520 Car-Chr11:12241544 Car13g00584 Car-Chr13:7664985 0 wgd
Car11g01520 Car-Chr11:12241544 Car19g00719 Car-Chr19:8221874 0 wgd
Car11g01520 Car-Chr11:12241544 Car02g00137 Car-Chr2:798512 0 wgd
Car11g01520 Car-Chr11:12241544 Car20g00526 Car-Chr20:2899070 0 wgd
Car11g01520 Car-Chr11:12241544 Car03g00472 Car-Chr3:5043138 0 wgd
Car11g01520 Car-Chr11:12241544 Car07g00253 Car-Chr7:1378530 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4348 PF01852 START 4.50E-56 CL0209 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01520 K09338 - csv:101219415 1311.21