Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01522 ATGTCTGAATTCAACGTGCAGATTCCATCTGCTTTTGACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCCGGGGCAAAAGAGTATGTTCATGTGCGCATACAGCAACGTAACGGGAGAAAAAGTCTGACAACTGTTCAAGGATTGAAGAAGGAATTTAGTTATAACAAAATACTTAAGGACCTGAAGAAGGAATTTTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCTACCTTCCTTGTGCAGGCTGGGATTGTGAAGAAGGAAAATATAAAGATTCACGGTTTCTAA 342 42.11 MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12252466 12254980 - Carg19078-RA Car11g01522 157475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01522 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 113 - -
Car11g01522 113 PIRSF Transl_init_SUI1_Euk 1 113 IPR005874 GO:0003743
Car11g01522 113 ProSiteProfiles Translation initiation factor SUI1 family profile. 31 101 IPR001950 GO:0003743|GO:0006413
Car11g01522 113 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 6 113 IPR005874 GO:0003743
Car11g01522 113 Pfam Translation initiation factor SUI1 28 102 IPR001950 GO:0003743|GO:0006413
Car11g01522 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 113 - -
Car11g01522 113 CDD eIF1_SUI1 29 112 IPR005874 GO:0003743
Car11g01522 113 Gene3D - 1 113 - -
Car11g01522 113 SUPERFAMILY eIF1-like 4 113 IPR036877 GO:0003743|GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01522 Car-Chr11:12252466 Car16g00540 Car-Chr16:3428428 1.22E-60 dispersed
Car11g01522 Car-Chr11:12252466 Car11g01523 Car-Chr11:12255877 7.24E-81 tandem
Car11g01522 Car-Chr11:12252466 Car19g00721 Car-Chr19:8228536 1.01E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01522 K03113 - csv:101219651 228.409