Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01549 ATGGGTTGGAGATCTCTGAGGAGTGCCAATTTGAGGATCTTGGCACAGGTTTTAGTCGGATTCGTGATCTGTGCAGCACAAGTTCTTCTCGGAATTACGAATCCAGGCGATTTTGCTGCTATTAGTAGCTTTCATACTGCGCTGGGGCTCCCCAATCTTCCTGGATGGGGCATTGGGCAAGACCCATGCGGAGACGCATGGCAGGGTGTTGTTTGTAATGATTCAAATATCATTAAAATAGTTGTTAATGCTGCTAATTTGGGAGGTGAACTCGGTGATAGCTTGGGACTGTTTTCTTCTATCCAAACAATTGATTTAAGCAACAATCATATAGGGGGAAGTATTCCATCAAGTTTACCCGTTACCATGCAGAACTTGTTTCTTTCAGCTAACGAGTTCACTGGAAGCATTCCAAGTTCATTATCATCTTTGATTCAACTGTCCGCCATGTCGTTGAACGACAACAAATTGAGTGGAGAAATACCAGATTCCTTTCAAGCCATTACTCAATTGGTCAATTTGGACTTATCCAATAACAACTTGAGTGGGCCACTGCCTCCATCTGCAAGCAATTTATTGGCATTGACCACCCTGCATTTGCAGAATAATCAACTATCAGGGACCCTTGATGTTCTACAAGATCTTCCACTAAAAGACTTGAATATAGAGAACAACCTTTTTTCTGGACCCATACCTGAGAAGTTGCTGAGTATCCCTAATTTTAGAAAGGATGGAAACCCATTTAATTCTTCTGTTTCTCCGACGCTTCCTCCTTCTGTATCTCCATCACCACCGTCACCGTCAAAGCCAGCACCACCACCAGCACCGCCTGTTCCTGAAGCACGACCATCTTCTCAACAAAAACCAAAGAATCAGGCTGATGGACCATCAGCGCCTGAGGAATTGAGCACTGGAAGAAATAAGAAAAACACTAAAAGGGTTGCTTTGATAACACTTGCAGCTGTATTGTCATTCATAATCTTGGTTTTGGCATGTGTGCTTTTTATGCCAAGGTGCAGAAGGAGAACGGTTGATAGTATTTCCAAGCGACGTCATCAGATAGGTGCTTATAGGGCTGAGAGAGAGAATGCTGGCAATGACGGATCCATGCGCCCTCCAGTTGATCAGATACCTAAAGTTCCGATCGAGGCAGTAGTAAGGCCGAAGCAGGAAACTCAAATAGAAGCTCAGAAGGTCCCAAAAGCTCATGAAGAGAGAGAGACAAACATGCCAAGAATGAGTGCTATACCGAAGAAGGATCATCATGAAGTAGATATGAGCGCACTCGATGTCTATCTAATGCCGCCCCCTCCCCCACCACCTCCCCCTCCACCACCACCACCTCCTATTGAAGAGGTCACTGCTGTGCCCAGTGTTCCAGCCGAAGTTCTTCCCTTGAAGCCTCCCACCAAACATAGAACTACCTCAACTTTTGCAAAATCTTTCACCATTGCGTCCCTACAGCAGTATACAAACAGCTTTTCACCGGAGAATCTTCTTGGAGAAGGTATGCTGGGGACTGTTTATAGGGCCCAGCTCCCCAGTGGGAAGCTACTGGCCGTCAAGAAACTGGATAAAAGAGCATTCAATCAACAAAAAGACGACGAGTTTCTTGAGTTAGTGAATAATATCGATAGAATCCGGCATGCTAATGTGGTTGAGCTCAGTGGTTACTGTGCAGAGCATGGCGAAAGGCTTCTTATCTATGAGTATTGCAGTGGTGGAACATTGCAGGATGCGTTGCACTCAGATGAAGAGTTTAGGAAGAACCTTTCTTGGAACGCCCGCATTCGAATGGCTCTTGGGGCTGCAAGAGCCTTGGAGTATCTGCATGAGGTCTGTCAGCCACCTGTTATTCATAGGAATTTCAAGTCTGCAAATGTCCTACTCGATGATGAGTTTTCAGTCCGTGTTTCGGATTGCGGTCTGGCTCCATTGATATCAAAAGGAGCTGTTAGTCAGCTATCAGGTCAGCTTCTGACAGCATATGGTTATGGGGCGCCAGAATTTGAATCGGGAGTTTATACACTCGAGAGTGACGTTTACAGCTTCGGTGTGGTTATGCTGGAACTTCTCACGGGACGGATGTCTTACGACAGAACAAGGACCCGAGGTGAGCAGTTCTTAGTCAGATGGGCGATTCCACAGCTTCATGACATAGAGGCATTGACGAGCATGGTCGATCCTTCACTCAATGGTCGATATCCTGCCAAATCCTTGTCGTACTTCGCCGATATCATATCAAAATGTGTTCAGTCGGAGCCTGAATTCCGGCCACCGATGTCGACGGTTGTTCAGGACTTGCTGAGCATGATAAGGAGAGAACCAAATGGCAGTGGTCCAAGTGAAGGTTGA 2355 46.03 MGWRSLRSANLRILAQVLVGFVICAAQVLLGITNPGDFAAISSFHTALGLPNLPGWGIGQDPCGDAWQGVVCNDSNIIKIVVNAANLGGELGDSLGLFSSIQTIDLSNNHIGGSIPSSLPVTMQNLFLSANEFTGSIPSSLSSLIQLSAMSLNDNKLSGEIPDSFQAITQLVNLDLSNNNLSGPLPPSASNLLALTTLHLQNNQLSGTLDVLQDLPLKDLNIENNLFSGPIPEKLLSIPNFRKDGNPFNSSVSPTLPPSVSPSPPSPSKPAPPPAPPVPEARPSSQQKPKNQADGPSAPEELSTGRNKKNTKRVALITLAAVLSFIILVLACVLFMPRCRRRTVDSISKRRHQIGAYRAERENAGNDGSMRPPVDQIPKVPIEAVVRPKQETQIEAQKVPKAHEERETNMPRMSAIPKKDHHEVDMSALDVYLMPPPPPPPPPPPPPPPIEEVTAVPSVPAEVLPLKPPTKHRTTSTFAKSFTIASLQQYTNSFSPENLLGEGMLGTVYRAQLPSGKLLAVKKLDKRAFNQQKDDEFLELVNNIDRIRHANVVELSGYCAEHGERLLIYEYCSGGTLQDALHSDEEFRKNLSWNARIRMALGAARALEYLHEVCQPPVIHRNFKSANVLLDDEFSVRVSDCGLAPLISKGAVSQLSGQLLTAYGYGAPEFESGVYTLESDVYSFGVVMLELLTGRMSYDRTRTRGEQFLVRWAIPQLHDIEALTSMVDPSLNGRYPAKSLSYFADIISKCVQSEPEFRPPMSTVVQDLLSMIRREPNGSGPSEG 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12382664 12389972 - Carg19105-RA Car11g01549 157502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01549 784 MobiDBLite consensus disorder prediction 257 283 - -
Car11g01549 784 Pfam Protein tyrosine and serine/threonine kinase 498 768 IPR001245 GO:0004672|GO:0006468
Car11g01549 784 MobiDBLite consensus disorder prediction 247 307 - -
Car11g01549 784 ProSiteProfiles Protein kinase domain profile. 494 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01549 - - - csv:101213734 1227.23
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g01549 Car19g00763 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00427 Car-Chr3:4843370 Car11g01549 Car-Chr11:12382664 1.31E-17 dispersed
Car11g01549 Car-Chr11:12382664 Car01g00018 Car-Chr1:92178 9.16E-165 dispersed
Car11g01549 Car-Chr11:12382664 Car19g00763 Car-Chr19:8416121 0 wgd
Car11g01549 Car-Chr11:12382664 Car03g00426 Car-Chr3:4840842 5.52E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g488 . Blo15g00549 . Bda13g00653 . . . . Cmo11g01937 Cmo19g01004 . . . . . Cpe15g00790 Cpe04g00762 Bhi05g01832 . . . . . . . . . . . . . . . . Cone12ag1436 . Csa07g00420 . . . . . . Bpe14g00667 . Bma02g01363 Bma12g00749 . . . Cma11g01861 Cma19g00972 Car11g01549 Car19g00763 . . . . . . . . . . . . . . . . Lsi11g01525 . Chy01g00369 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car11g01549 CST 30 782 Strubbelig Receptor Gene Family AT4G03390 62.3 1.4e-206 716.8
Car19g00763 CST 9 649 Strubbelig Receptor Gene Family AT4G03390 53.9 4.7e-173 605.5
Car17g00608 CCT,CST 290 593 Strubbelig Receptor Gene Family AT4G03390 56.5 5.8e-91 332.8
Car08g00721 CCT,CST 417 720 Strubbelig Receptor Gene Family AT4G03390 56.1 4.9e-90 329.7
Car06g00077 CST 9 698 Strubbelig Receptor Gene Family AT5G06820 50.9 7.3e-168 588.2
Car04g00906 . 12 678 Strubbelig Receptor Gene Family AT1G78980 60.7 2.8e-185 646.0
Car15g01289 . 49 704 Strubbelig Receptor Gene Family AT1G78980 56.0 2.4e-168 589.7
Car01g00018 CCT,CST 30 717 Strubbelig Receptor Gene Family AT1G78980 51.6 3.6e-148 522.7
Car17g00608 CCT,CST 267 596 Strubbelig Receptor Gene Family AT1G78980 58.8 3.7e-105 379.8
Car19g00763 CST 346 641 Strubbelig Receptor Gene Family AT1G78980 52.9 1.1e-83 308.5
Car11g01549 CST 4 656 Strubbelig Receptor Gene Family AT2G20850 50.1 1.4e-130 464.2
Car04g00906 . 12 656 Strubbelig Receptor Gene Family AT3G13065 53.4 4.3e-138 489.2
Car15g01289 . 47 700 Strubbelig Receptor Gene Family AT3G13065 52.7 4.2e-133 472.6
Car08g00721 CCT,CST 38 718 Strubbelig Receptor Gene Family AT3G13065 50.5 6.3e-105 379.0
Car17g00608 CCT,CST 300 591 Strubbelig Receptor Gene Family AT3G13065 60.3 7.4e-98 355.5
Car19g00763 CST 346 639 Strubbelig Receptor Gene Family AT1G11130 61.9 8.5e-102 368.6
Car08g00721 CCT,CST 430 718 Strubbelig Receptor Gene Family AT1G11130 52.9 3.0e-83 307.0
Car17g00608 CCT,CST 281 591 Strubbelig Receptor Gene Family AT1G11130 50.5 1.5e-82 304.7
Car13g00311 . 388 606 Strubbelig Receptor Gene Family AT1G11130 50.7 1.4e-56 218.4
Car11g01549 CST 4 656 Strubbelig Receptor Gene Family AT2G20850 50.1 1.4e-130 464.2
Car06g00077 CST 9 698 Strubbelig Receptor Gene Family AT5G06820 50.9 7.3e-168 588.2
Car11g01549 CST 30 782 Strubbelig Receptor Gene Family AT4G03390 62.3 1.4e-206 716.8
Car19g00763 CST 9 649 Strubbelig Receptor Gene Family AT4G03390 53.9 4.7e-173 605.5
Car17g00608 CCT,CST 290 593 Strubbelig Receptor Gene Family AT4G03390 56.5 5.8e-91 332.8
Car08g00721 CCT,CST 417 720 Strubbelig Receptor Gene Family AT4G03390 56.1 4.9e-90 329.7
Car04g00906 . 12 656 Strubbelig Receptor Gene Family AT3G13065 53.4 4.3e-138 489.2
Car15g01289 . 47 700 Strubbelig Receptor Gene Family AT3G13065 52.7 4.2e-133 472.6
Car08g00721 CCT,CST 38 718 Strubbelig Receptor Gene Family AT3G13065 50.5 6.3e-105 379.0
Car17g00608 CCT,CST 300 591 Strubbelig Receptor Gene Family AT3G13065 60.3 7.4e-98 355.5
Car04g00906 . 12 678 Strubbelig Receptor Gene Family AT1G78980 60.7 2.8e-185 646.0
Car15g01289 . 49 704 Strubbelig Receptor Gene Family AT1G78980 56.0 2.4e-168 589.7
Car01g00018 CCT,CST 30 717 Strubbelig Receptor Gene Family AT1G78980 51.6 3.6e-148 522.7
Car17g00608 CCT,CST 267 596 Strubbelig Receptor Gene Family AT1G78980 58.8 3.7e-105 379.8
Car19g00763 CST 346 641 Strubbelig Receptor Gene Family AT1G78980 52.9 1.1e-83 308.5
Car01g00018 CCT,CST 1 708 Strubbelig Receptor Gene Family AT1G53730 61.7 1.1e-211 733.8
Car08g00721 CCT,CST 33 731 Strubbelig Receptor Gene Family AT1G53730 58.6 6.2e-180 628.2
Car17g00608 CCT,CST 1 604 Strubbelig Receptor Gene Family AT1G53730 64.1 1.3e-164 577.4
Car14g01081 . 28 303 Strubbelig Receptor Gene Family AT1G53730 53.1 2.7e-98 357.1
Car19g00763 CST 349 641 Strubbelig Receptor Gene Family AT1G53730 56.9 1.1e-88 325.1
Car04g01906 . 6 123 Strubbelig Receptor Gene Family AT1G53730 83.2 2.1e-50 198.0
Car01g00018 CCT,CST 11 714 Strubbelig Receptor Gene Family AT3G14350 51.6 1.3e-182 637.1
Car08g00721 CCT,CST 42 729 Strubbelig Receptor Gene Family AT3G14350 54.6 3.6e-161 565.8
Car17g00608 CCT,CST 1 608 Strubbelig Receptor Gene Family AT3G14350 56.0 1.9e-141 500.4
Car19g00763 CST 348 649 Strubbelig Receptor Gene Family AT3G14350 52.3 1.2e-76 285.0
Car04g01906 . 6 130 Strubbelig Receptor Gene Family AT3G14350 80.0 5.2e-51 199.9
Car18g00525 . 70 592 Strubbelig Receptor Gene Family AT4G22130 51.2 6.2e-119 425.2
Car01g00018 CCT,CST 404 726 Strubbelig Receptor Gene Family AT4G22130 62.8 2.6e-117 419.9
Car08g00721 CCT,CST 424 733 Strubbelig Receptor Gene Family AT4G22130 65.7 7.6e-117 418.3
Car17g00608 CCT,CST 297 613 Strubbelig Receptor Gene Family AT4G22130 64.3 2.2e-116 416.8
Car13g00311 . 344 607 Strubbelig Receptor Gene Family AT4G22130 77.7 1.0e-113 407.9
Car11g01549 CST 450 774 Strubbelig Receptor Gene Family AT4G22130 56.8 1.6e-106 384.0
Car19g00763 CST 346 641 Strubbelig Receptor Gene Family AT4G22130 60.3 8.7e-105 378.3
Car04g00906 . 361 678 Strubbelig Receptor Gene Family AT4G22130 55.7 7.7e-101 365.2
Car15g01289 . 391 704 Strubbelig Receptor Gene Family AT4G22130 56.4 2.6e-96 350.1
Car14g00396 CST 343 651 Strubbelig Receptor Gene Family AT4G22130 50.8 2.2e-87 320.5
Car04g01906 . 1 145 Strubbelig Receptor Gene Family AT4G22130 86.9 4.1e-70 263.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003611 2 1 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 0 1 1 1 1 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89204 PF07714 PK_Tyr_Ser-Thr 5.20E-42 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g01549 Car_Chr11 FPKM 0.108505 0.148667 0.072333 0.072705 0.345119 0.252898 0.453741 0.597728 0.600758 0.608094
Car11g01549 Car_Chr00 FPKM 0.206229 0.0 0.0 0.0 0.217594 0.277922 0.0 0.0 0.24996 0.15227
Car11g01549 Car_Chr00 FPKM 1.2 1.033325 0.0 0.0 0.779952 1.070397 0.0 0.8287 1.241099 0.995779
Car11g01549 Car_Chr00 FPKM 4.08156 6.619621 6.488441 6.566759 5.723583 4.424411 5.021857 19.517864 18.257626 19.233898