Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01561 ATGCAGCTCCGCCGTGGCCATGCTACATTTTCGTCTTGTGGGTACTTATGGAGTGGGATAATGTTGGTGAATATGGTCGTGATGGGGAAGTTTCTTCTCGTTGAATCAGCTCGGCCTCAAAACCGTACGTCAGCTTCTCATTGGCTCCCCGCCACCGCCACCTGGTACGGCAGTCCCGAAGGCGATGGCAGCGACGGTGGGGCATGTGGGTATGGTAGTTTGGTGGATGTGAAGCCATTTAAGGCGAGAGTTGGTGCAGTGAGCCCTGTCTTATTCAAGGACGGTGAAGGGTGTGGCGCATGCTATAAAGTCCGTTGCTTGGACCGAACCATATGCTCCAAACGAGCCGTTACCATAATAGTCACCGACGAGTGTCCCGGTGGCTATTGCTCCAATGGTCGCACCCACTTCGATCTTAGTGGCGCCGCCTTCGGCCGCATGGCTGTCGCCGGTGCCCACAGCCGTCTCCGTGACCGAGGCGAACTCTCGGTCGCCTACCGACGGACTCCATGTTTGTATCGTGGGAAGAACATAGCCTTCCATGTAAACGAAGGTTCTACCGATCATTGGCTCTCGCTTTTAGTCGAGTTCGAGGATGGTGATGGAGATATTGGTTCTATGCAAATCAAACAAGTAAGCTTTTAA 645 53.64 MQLRRGHATFSSCGYLWSGIMLVNMVVMGKFLLVESARPQNRTSASHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPFKARVGAVSPVLFKDGEGCGACYKVRCLDRTICSKRAVTIIVTDECPGGYCSNGRTHFDLSGAAFGRMAVAGAHSRLRDRGELSVAYRRTPCLYRGKNIAFHVNEGSTDHWLSLLVEFEDGDGDIGSMQIKQVSF 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12429556 12431501 - Carg19117-RA Car11g01561 157514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01561 214 Pfam Lytic transglycolase 86 150 IPR009009 -
Car11g01561 214 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 176 IPR007112 -
Car11g01561 214 Pfam Expansin C-terminal domain 178 212 IPR007117 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00090 Car11g01561 CCT
Car11g01561 Car20g00551 CCT
Car11g01561 Car20g00166 CCT
Car11g01561 Car20g00551 ECH
Car11g01561 Car19g00816 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01561 Car-Chr11:12429556 Car12g00621 Car-Chr12:4215542 1.32E-56 dispersed
Car11g01561 Car-Chr11:12429556 Car02g00090 Car-Chr2:582178 1.61E-108 wgd
Car11g01561 Car-Chr11:12429556 Car20g00166 Car-Chr20:913776 1.59E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01561 K20628 - csv:101205324 363.999