Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01576 ATGGCTTCATCCAGAGAGCGCGAGAACTTCGTTTACATCGCCAAGCTCGCCGAGCAGGCCGAGCGTTATGATGAAATGGTGGATGCAATGAAGAATGTTGCAAAGCTTGATGTCGAATTGACAGTGGAGGAAAGAAATTTACTCTCTGTTGGGTACAAGAATGTGGTTGGTGCAAGGAGAGCTTCATGGAGGATTTTATCATCAATAGAGCAGAAAGAAGAAGCTAAAGGAAATGAAACAAATGCCAAACGCATCAAGGAGTACAGACAAAAGGTTGAAACAGAGCTCTCTGGTATTTGTACTGATATCATGACAGTGATTGACGAACACCTAATTCCCTCTGCTTCAGCTGGGGAATCAACAGTGTTCTACTATAAGATGAAAGGAGATTATTATCGTTACCTTGCAGAATTTAAATCTGGTAATGAGAAGAAAGATGCAGCTGATCAATCGATGAAAGCATATGAGGCTGCAACTAGCTCAGCCGAATCTGAATTGCCTCCTACACATCCTATCCGCTTGGGTTTGGCATTAAATTTCTCTGTCTTCTATTATGAAATCCTGAATTCACCTGAAAGGGCCTGCCACCTTGCAAAGCAAGCTTTTGATGGAGCCATCTCCGAACTTGACACCCTCAATGAGGAGTCTTACAAAGATAGCACCTTAATCATGCAGCTTCTTAGAGACAACCTCACATTATGGACTTCTGACATCCCAGAGGATGGAGATGATGCCCAAAAGGTCAACGGCACCGTCAAAGTTGCCGGTGGCGACGATGAGTGA 783 43.93 MASSRERENFVYIAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVVGARRASWRILSSIEQKEEAKGNETNAKRIKEYRQKVETELSGICTDIMTVIDEHLIPSASAGESTVFYYKMKGDYYRYLAEFKSGNEKKDAADQSMKAYEAATSSAESELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDGAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDGDDAQKVNGTVKVAGGDDE 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12512982 12516032 - Carg19132-RA Car11g01576 157529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01576 260 ProSitePatterns 14-3-3 proteins signature 2. 217 236 IPR023409 -
Car11g01576 260 ProSitePatterns 14-3-3 proteins signature 1. 45 55 IPR023409 -
Car11g01576 260 Coils Coil 13 33 - -
Car11g01576 260 Gene3D - 1 250 IPR036815 -
Car11g01576 260 PRINTS 14-3-3 protein zeta signature 39 68 IPR000308 -
Car11g01576 260 PRINTS 14-3-3 protein zeta signature 88 112 IPR000308 -
Car11g01576 260 PRINTS 14-3-3 protein zeta signature 119 141 IPR000308 -
Car11g01576 260 PRINTS 14-3-3 protein zeta signature 154 180 IPR000308 -
Car11g01576 260 PRINTS 14-3-3 protein zeta signature 181 207 IPR000308 -
Car11g01576 260 PRINTS 14-3-3 protein zeta signature 208 237 IPR000308 -
Car11g01576 260 PIRSF 14-3-3 1 247 IPR000308 -
Car11g01576 260 Pfam 14-3-3 protein 14 235 IPR023410 -
Car11g01576 260 SUPERFAMILY 14-3-3 protein 6 237 IPR036815 -
Car11g01576 260 PANTHER 14-3-3 DOMAIN-CONTAINING PROTEIN-RELATED 3 246 - -
Car11g01576 260 SMART 1433_4 7 248 IPR023410 -
Car11g01576 260 PANTHER 14-3-3 PROTEIN 3 246 IPR000308 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01576 K06630 YWHAE; 14-3-3 protein epsilon - csv:101208446 486.108
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01734 Car-Chr4:9931031 Car11g01576 Car-Chr11:12512982 5.92E-116 dispersed
Car05g00393 Car-Chr5:2246184 Car11g01576 Car-Chr11:12512982 3.27E-53 dispersed
Car05g00448 Car-Chr5:2561609 Car11g01576 Car-Chr11:12512982 5.97E-150 dispersed
Car11g01576 Car-Chr11:12512982 Car12g00098 Car-Chr12:528217 5.53E-146 dispersed
Car12g00168 Car-Chr12:1031087 Car11g01576 Car-Chr11:12512982 4.44E-111 dispersed
Car11g01576 Car-Chr11:12512982 Car19g00808 Car-Chr19:8705985 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car09g00495 CCT,CST 4 242 14-3-3 family AT4G09000 90.4 4.6e-119 424.9
Car05g00457 CCT,CST 3 242 14-3-3 family AT4G09000 89.7 3.9e-118 421.8
Car01g01232 CCT,CST 4 242 14-3-3 family AT4G09000 89.5 8.7e-118 420.6
Car12g00154 CCT,CST 4 242 14-3-3 family AT4G09000 90.0 1.1e-117 420.2
Car01g00402 . 6 241 14-3-3 family AT4G09000 86.4 4.2e-112 401.7
Car05g00505 . 10 247 14-3-3 family AT4G09000 74.8 1.2e-98 357.1
Car12g00168 . 10 246 14-3-3 family AT4G09000 73.0 4.2e-96 348.6
Car19g00808 . 4 238 14-3-3 family AT4G09000 73.0 3.9e-94 342.0
Car11g01576 . 4 238 14-3-3 family AT4G09000 72.2 1.3e-92 337.0
Car05g00448 CCT,ECH 5 236 14-3-3 family AT4G09000 70.1 5.9e-90 328.2
Car12g00098 . 46 277 14-3-3 family AT4G09000 71.8 2.9e-89 325.9
Car01g01226 CCT,ECH 5 236 14-3-3 family AT4G09000 68.4 1.8e-83 306.6
Car04g01734 . 4 204 14-3-3 family AT4G09000 60.9 4.0e-70 262.3
Car05g00394 . 1 111 14-3-3 family AT4G09000 80.2 3.1e-46 183.0
Car05g00457 CCT,CST 6 261 14-3-3 family AT1G78300 89.5 6.6e-124 440.7
Car09g00495 CCT,CST 5 258 14-3-3 family AT1G78300 89.8 1.1e-123 439.9
Car12g00154 CCT,CST 8 261 14-3-3 family AT1G78300 89.8 3.3e-123 438.3
Car01g01232 CCT,CST 5 258 14-3-3 family AT1G78300 89.4 4.3e-123 438.0
Car01g00402 . 6 253 14-3-3 family AT1G78300 87.5 1.6e-117 419.5
Car05g00505 . 11 246 14-3-3 family AT1G78300 76.3 2.5e-99 359.0
Car12g00168 . 11 247 14-3-3 family AT1G78300 74.3 5.3e-97 351.3
Car19g00808 . 7 247 14-3-3 family AT1G78300 71.6 1.1e-94 343.6
Car11g01576 . 7 247 14-3-3 family AT1G78300 71.6 9.3e-94 340.5
Car05g00448 CCT,ECH 1 250 14-3-3 family AT1G78300 67.5 5.1e-92 334.7
Car12g00098 . 46 295 14-3-3 family AT1G78300 69.4 4.3e-91 331.6
Car01g01226 CCT,ECH 1 248 14-3-3 family AT1G78300 65.6 2.3e-84 309.3
Car04g01734 . 8 209 14-3-3 family AT1G78300 61.5 4.2e-70 261.9
Car05g00394 . 1 114 14-3-3 family AT1G78300 78.9 3.8e-47 185.7
Car01g00402 . 6 259 14-3-3 family AT5G38480 89.0 3.6e-122 434.9
Car09g00495 CCT,CST 6 252 14-3-3 family AT5G38480 85.8 2.5e-115 412.1
Car12g00154 CCT,CST 6 252 14-3-3 family AT5G38480 85.8 2.7e-114 408.7
Car01g01232 CCT,CST 6 252 14-3-3 family AT5G38480 84.6 1.0e-113 406.8
Car05g00457 CCT,CST 6 252 14-3-3 family AT5G38480 84.6 1.2e-112 403.3
Car12g00168 . 10 251 14-3-3 family AT5G38480 74.0 3.0e-97 352.1
Car05g00505 . 10 248 14-3-3 family AT5G38480 74.1 8.8e-97 350.5
Car05g00448 CCT,ECH 5 247 14-3-3 family AT5G38480 71.8 5.9e-93 337.8
Car19g00808 . 7 247 14-3-3 family AT5G38480 72.4 5.9e-93 337.8
Car11g01576 . 7 249 14-3-3 family AT5G38480 71.4 1.7e-92 336.3
Car12g00098 . 46 293 14-3-3 family AT5G38480 72.0 1.1e-91 333.6
Car01g01226 CCT,ECH 5 242 14-3-3 family AT5G38480 67.5 5.6e-83 304.7
Car04g01734 . 8 213 14-3-3 family AT5G38480 62.6 6.8e-73 271.2
Car05g00394 . 1 115 14-3-3 family AT5G38480 76.5 1.3e-44 177.2
Car09g00495 CCT,CST 4 242 14-3-3 family AT1G35160 90.4 9.5e-119 423.7
Car05g00457 CCT,CST 3 242 14-3-3 family AT1G35160 89.6 6.2e-118 421.0
Car12g00154 CCT,CST 6 242 14-3-3 family AT1G35160 90.7 8.1e-118 420.6
Car01g01232 CCT,CST 4 242 14-3-3 family AT1G35160 88.7 3.1e-117 418.7
Car01g00402 . 6 240 14-3-3 family AT1G35160 87.2 3.0e-112 402.1
Car05g00505 . 11 246 14-3-3 family AT1G35160 75.4 9.3e-98 354.0
Car12g00168 . 1 246 14-3-3 family AT1G35160 72.4 1.3e-96 350.1
Car19g00808 . 2 237 14-3-3 family AT1G35160 71.8 9.0e-93 337.4
Car11g01576 . 2 237 14-3-3 family AT1G35160 71.0 2.2e-91 332.8
Car12g00098 . 42 277 14-3-3 family AT1G35160 71.8 4.2e-90 328.6
Car05g00448 CCT,ECH 5 236 14-3-3 family AT1G35160 69.7 5.5e-90 328.2
Car01g01226 CCT,ECH 5 236 14-3-3 family AT1G35160 68.4 1.7e-83 306.6
Car04g01734 . 8 204 14-3-3 family AT1G35160 61.1 2.4e-69 259.6
Car05g00394 . 1 111 14-3-3 family AT1G35160 81.1 1.3e-46 184.1
Car01g00402 . 5 254 14-3-3 family AT5G16050 85.6 4.0e-116 414.8
Car09g00495 CCT,CST 4 251 14-3-3 family AT5G16050 81.5 2.4e-108 389.0
Car12g00154 CCT,CST 3 253 14-3-3 family AT5G16050 78.9 6.9e-108 387.5
Car05g00457 CCT,CST 3 253 14-3-3 family AT5G16050 78.1 3.4e-107 385.2
Car01g01232 CCT,CST 4 251 14-3-3 family AT5G16050 78.7 2.5e-105 379.0
Car05g00505 . 10 244 14-3-3 family AT5G16050 71.5 3.4e-91 332.0
Car12g00168 . 10 248 14-3-3 family AT5G16050 69.5 1.3e-90 330.1
Car19g00808 . 1 246 14-3-3 family AT5G16050 66.7 5.7e-86 314.7
Car12g00098 . 41 284 14-3-3 family AT5G16050 66.3 1.8e-84 309.7
Car11g01576 . 1 246 14-3-3 family AT5G16050 65.5 2.4e-84 309.3
Car05g00448 CCT,ECH 2 247 14-3-3 family AT5G16050 64.1 5.3e-84 308.1
Car01g01226 CCT,ECH 5 239 14-3-3 family AT5G16050 63.3 1.2e-75 280.4
Car04g01734 . 3 209 14-3-3 family AT5G16050 54.1 1.5e-62 236.9
Car05g00394 . 1 111 14-3-3 family AT5G16050 77.5 3.5e-43 172.6
Car05g00505 . 9 264 14-3-3 family AT5G10450 83.2 2.7e-115 412.1
Car12g00168 . 1 246 14-3-3 family AT5G10450 85.8 4.2e-113 404.8
Car12g00154 CCT,CST 8 251 14-3-3 family AT5G10450 78.0 4.7e-104 374.8
Car01g01232 CCT,CST 4 242 14-3-3 family AT5G10450 79.2 8.0e-104 374.0
Car09g00495 CCT,CST 4 250 14-3-3 family AT5G10450 75.8 1.8e-103 372.9
Car05g00457 CCT,CST 1 251 14-3-3 family AT5G10450 76.2 3.1e-103 372.1
Car01g00402 . 7 259 14-3-3 family AT5G10450 73.6 1.2e-102 370.2
Car19g00808 . 1 238 14-3-3 family AT5G10450 66.4 1.2e-86 317.0
Car11g01576 . 1 238 14-3-3 family AT5G10450 66.4 2.6e-86 315.8
Car05g00448 CCT,ECH 5 236 14-3-3 family AT5G10450 66.8 1.7e-85 313.2
Car12g00098 . 46 277 14-3-3 family AT5G10450 65.5 6.6e-82 301.2
Car01g01226 CCT,ECH 5 236 14-3-3 family AT5G10450 64.3 1.8e-79 293.1
Car04g01734 . 3 204 14-3-3 family AT5G10450 57.1 6.6e-66 248.1
Car05g00394 . 1 111 14-3-3 family AT5G10450 71.2 5.7e-41 165.2
Car01g00402 . 4 260 14-3-3 family AT3G02520 90.7 3.8e-127 451.4
Car09g00495 CCT,CST 5 258 14-3-3 family AT3G02520 85.9 1.5e-118 422.9
Car12g00154 CCT,CST 6 259 14-3-3 family AT3G02520 85.1 2.1e-117 419.1
Car05g00457 CCT,CST 6 252 14-3-3 family AT3G02520 86.3 5.2e-116 414.5
Car01g01232 CCT,CST 5 258 14-3-3 family AT3G02520 83.2 1.5e-115 412.9
Car05g00505 . 10 252 14-3-3 family AT3G02520 72.3 7.6e-99 357.5
Car12g00168 . 10 248 14-3-3 family AT3G02520 74.1 4.9e-98 354.8
Car19g00808 . 4 238 14-3-3 family AT3G02520 73.4 6.2e-93 337.8
Car12g00098 . 39 301 14-3-3 family AT3G02520 68.8 1.8e-92 336.3
Car05g00448 CCT,ECH 1 249 14-3-3 family AT3G02520 68.7 4.0e-92 335.1
Car11g01576 . 1 249 14-3-3 family AT3G02520 70.0 2.6e-91 332.4
Car01g01226 CCT,ECH 1 239 14-3-3 family AT3G02520 67.2 4.0e-84 308.5
Car04g01734 . 8 204 14-3-3 family AT3G02520 61.1 5.6e-70 261.5
Car05g00394 . 1 111 14-3-3 family AT3G02520 76.6 1.5e-43 173.7
Car05g00505 . 9 247 14-3-3 family AT5G65430 89.1 1.8e-116 416.0
Car12g00168 . 9 246 14-3-3 family AT5G65430 87.0 1.4e-113 406.4
Car05g00457 CCT,CST 3 242 14-3-3 family AT5G65430 79.7 2.6e-104 375.6
Car09g00495 CCT,CST 8 242 14-3-3 family AT5G65430 79.7 1.3e-103 373.2
Car12g00154 CCT,CST 1 242 14-3-3 family AT5G65430 79.4 2.2e-103 372.5
Car01g00402 . 7 241 14-3-3 family AT5G65430 78.8 3.8e-103 371.7
Car01g01232 CCT,CST 8 242 14-3-3 family AT5G65430 79.7 6.5e-103 370.9
Car19g00808 . 1 238 14-3-3 family AT5G65430 68.9 7.0e-89 324.3
Car11g01576 . 1 238 14-3-3 family AT5G65430 68.9 1.5e-88 323.2
Car05g00448 CCT,ECH 5 236 14-3-3 family AT5G65430 68.9 1.4e-86 316.6
Car12g00098 . 46 277 14-3-3 family AT5G65430 67.7 2.0e-83 306.2
Car01g01226 CCT,ECH 5 236 14-3-3 family AT5G65430 66.0 7.0e-81 297.7
Car04g01734 . 8 204 14-3-3 family AT5G65430 60.0 8.8e-68 254.2
Car05g00394 . 1 111 14-3-3 family AT5G65430 73.9 4.9e-42 168.7
Car19g00808 . 1 261 14-3-3 family AT2G42590 81.7 7.6e-118 420.6
Car11g01576 . 1 259 14-3-3 family AT2G42590 80.5 3.2e-116 415.2
Car05g00448 CCT,ECH 4 242 14-3-3 family AT2G42590 77.8 2.4e-103 372.5
Car12g00098 . 42 291 14-3-3 family AT2G42590 74.8 2.0e-102 369.4
Car01g01226 CCT,ECH 3 240 14-3-3 family AT2G42590 73.1 2.5e-97 352.4
Car01g00402 . 8 248 14-3-3 family AT2G42590 73.4 3.2e-92 335.5
Car09g00495 CCT,CST 8 247 14-3-3 family AT2G42590 71.3 1.6e-91 333.2
Car12g00154 CCT,CST 8 248 14-3-3 family AT2G42590 71.0 2.7e-91 332.4
Car01g01232 CCT,CST 8 245 14-3-3 family AT2G42590 70.6 6.7e-90 327.8
Car05g00457 CCT,CST 8 248 14-3-3 family AT2G42590 70.5 1.1e-89 327.0
Car12g00168 . 11 248 14-3-3 family AT2G42590 63.9 1.6e-80 296.6
Car05g00505 . 11 244 14-3-3 family AT2G42590 65.0 2.8e-80 295.8
Car04g01734 . 6 208 14-3-3 family AT2G42590 65.1 4.1e-79 292.0
Car05g00394 . 1 115 14-3-3 family AT2G42590 83.5 6.1e-51 198.4
Car05g00448 CCT,ECH 1 241 14-3-3 family AT1G22300 81.3 7.9e-106 380.6
Car11g01576 . 6 242 14-3-3 family AT1G22300 78.1 3.1e-102 368.6
Car19g00808 . 6 242 14-3-3 family AT1G22300 78.1 4.1e-102 368.2
Car12g00098 . 43 282 14-3-3 family AT1G22300 76.3 1.3e-100 363.2
Car01g01226 CCT,ECH 1 240 14-3-3 family AT1G22300 72.1 1.7e-92 336.3
Car01g00402 . 4 246 14-3-3 family AT1G22300 70.8 2.5e-91 332.4
Car12g00154 CCT,CST 8 246 14-3-3 family AT1G22300 70.3 1.1e-88 323.6
Car01g01232 CCT,CST 8 245 14-3-3 family AT1G22300 69.3 3.3e-88 322.0
Car09g00495 CCT,CST 8 245 14-3-3 family AT1G22300 68.9 1.3e-87 320.1
Car05g00457 CCT,CST 8 246 14-3-3 family AT1G22300 69.0 8.2e-87 317.4
Car05g00505 . 11 244 14-3-3 family AT1G22300 66.2 3.7e-79 292.0
Car04g01734 . 5 212 14-3-3 family AT1G22300 64.2 6.3e-79 291.2
Car12g00168 . 11 248 14-3-3 family AT1G22300 63.9 6.3e-79 291.2
Car05g00394 . 1 115 14-3-3 family AT1G22300 78.3 1.2e-45 180.6
Car05g00393 . 1 101 14-3-3 family AT1G22300 75.2 4.1e-38 155.6
Car05g00448 CCT,ECH 1 245 14-3-3 family AT1G34760 80.8 7.9e-106 380.6
Car19g00808 . 6 246 14-3-3 family AT1G34760 80.9 2.3e-105 379.0
Car12g00098 . 43 285 14-3-3 family AT1G34760 80.7 1.5e-104 376.3
Car11g01576 . 6 246 14-3-3 family AT1G34760 80.1 2.5e-104 375.6
Car01g01226 CCT,ECH 1 243 14-3-3 family AT1G34760 73.3 9.1e-94 340.5
Car01g00402 . 4 250 14-3-3 family AT1G34760 70.9 1.4e-89 326.6
Car09g00495 CCT,CST 12 249 14-3-3 family AT1G34760 71.8 4.0e-89 325.1
Car01g01232 CCT,CST 8 249 14-3-3 family AT1G34760 69.8 1.1e-88 323.6
Car12g00154 CCT,CST 8 245 14-3-3 family AT1G34760 71.4 1.1e-88 323.6
Car05g00457 CCT,CST 8 245 14-3-3 family AT1G34760 71.8 3.3e-88 322.0
Car04g01734 . 5 208 14-3-3 family AT1G34760 69.0 3.6e-82 302.0
Car05g00505 . 11 246 14-3-3 family AT1G34760 64.4 5.4e-78 288.1
Car12g00168 . 11 247 14-3-3 family AT1G34760 63.3 2.0e-77 286.2
Car05g00394 . 1 115 14-3-3 family AT1G34760 82.6 8.9e-49 191.0
Car05g00393 . 1 101 14-3-3 family AT1G34760 77.2 7.1e-38 154.8
Car12g00098 . 40 301 14-3-3 family AT1G26480 83.2 1.1e-118 423.3
Car19g00808 . 3 242 14-3-3 family AT1G26480 81.7 2.4e-108 389.0
Car11g01576 . 3 242 14-3-3 family AT1G26480 80.0 1.0e-106 383.6
Car05g00448 CCT,ECH 4 249 14-3-3 family AT1G26480 77.2 1.6e-104 376.3
Car01g01226 CCT,ECH 3 244 14-3-3 family AT1G26480 71.9 1.9e-94 342.8
Car12g00154 CCT,CST 8 260 14-3-3 family AT1G26480 72.0 8.2e-93 337.4
Car05g00457 CCT,CST 8 260 14-3-3 family AT1G26480 71.7 1.4e-92 336.7
Car09g00495 CCT,CST 8 256 14-3-3 family AT1G26480 71.3 3.1e-92 335.5
Car01g01232 CCT,CST 8 247 14-3-3 family AT1G26480 73.3 9.0e-92 334.0
Car01g00402 . 5 256 14-3-3 family AT1G26480 71.7 4.5e-91 331.6
Car04g01734 . 2 208 14-3-3 family AT1G26480 74.0 5.0e-90 328.2
Car05g00505 . 11 244 14-3-3 family AT1G26480 66.2 2.1e-80 296.2
Car12g00168 . 11 244 14-3-3 family AT1G26480 65.4 5.1e-79 291.6
Car05g00394 . 1 115 14-3-3 family AT1G26480 93.9 1.0e-55 214.2
Car05g00393 . 1 101 14-3-3 family AT1G26480 79.2 1.2e-38 157.5
Car05g00448 CCT,ECH 1 234 14-3-3 family AT1G78220 51.1 1.6e-63 240.0
Car12g00098 . 43 275 14-3-3 family AT1G78220 51.7 2.8e-63 239.2
Car19g00808 . 6 236 14-3-3 family AT1G78220 50.4 2.3e-62 236.1
Car11g01576 . 6 236 14-3-3 family AT1G78220 50.4 4.0e-62 235.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000281 3 7 3 4 1 5 6 5 5 3 5 5 6 5 5 5 5 6 6 5 5 5 5 4 4 5 4 9 8 4 148
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g01576 Car_Chr11 FPKM 558.183105 575.898071 1387.488159 1389.091797 29.92437 27.665203 32.976555 4.172315 3.980172 3.181695