Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01596 ATGGTTTCCAAAGAGAAATCCACCGCCAAAAAGCTTCCTTCTCTCTGCGACACCAACAACAATGCCAGAGAACTCCATTTCCGAGGCGTTCGTAAGAGGCCTTGGGGCCGATACGCCGCCGAGATCCGAGATCCCGGCAAGAAGAGCCGCGTTTGGCTCGGAACCTTCGATACGGCGGAGGAGGCGGCGTATGCTTACGATAACGCCGCGCGCCAGTTCCGCGGCGCAAAAGCTAAAACCAATTTCCCTCCACCTGATGAGTTGATCGACGTTTCTCCTCGCAAGATCAGCCAAAGCCCTAGCCCTAGCAGCACCGTCGAATCCTCTTCCTCCTCCAGCCAAGAAAAAACTCCCTCAACGGAGATCGTCCGTAGCTACGGCGTCGCACGAACTTTTCCGTTCATTCAGCCGCAGTTTTTGCATCAAGTCGGCGGAGGCGGTAGCGCTCGTCCTGTTTTGTTCATGGATGCTTTTGTTCGACCTGAGTTTGTCGCTCAGGGCTATCCTATTCGGTACGATTCGGCAAGGTTCGCCGCCGAGATCCAGACCAAATCGGACTCATTGTCCGTGGTTGACTGCCGGCCGGCGAAGGAAATTCTCAATCTCGACCTTAATCTCGCTCCGCCCGTGGATGCTTGA 639 55.4 MVSKEKSTAKKLPSLCDTNNNARELHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAYAYDNAARQFRGAKAKTNFPPPDELIDVSPRKISQSPSPSSTVESSSSSSQEKTPSTEIVRSYGVARTFPFIQPQFLHQVGGGGSARPVLFMDAFVRPEFVAQGYPIRYDSARFAAEIQTKSDSLSVVDCRPAKEILNLDLNLAPPVDA 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12622845 12623483 + Carg19152-RA Car11g01596 157549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01596 212 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Car11g01596 212 MobiDBLite consensus disorder prediction 94 120 - -
Car11g01596 212 MobiDBLite consensus disorder prediction 1 21 - -
Car11g01596 212 MobiDBLite consensus disorder prediction 77 120 - -
Car11g01596 212 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g01596 Car19g00789 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01044 Car-Chr1:9875064 Car11g01596 Car-Chr11:12622845 6.89E-35 dispersed
Car11g01596 Car-Chr11:12622845 Car20g00207 Car-Chr20:1191194 3.75E-33 dispersed
Car18g00365 Car-Chr18:2251102 Car11g01596 Car-Chr11:12622845 1.56E-42 dispersed
Car11g01596 Car-Chr11:12622845 Car13g00514 Car-Chr13:7219451 2.61E-33 wgd
Car11g01596 Car-Chr11:12622845 Car18g00363 Car-Chr18:2243213 1.58E-31 wgd
Car11g01596 Car-Chr11:12622845 Car19g00789 Car-Chr19:8566593 1.64E-98 wgd
Car11g01596 Car-Chr11:12622845 Car09g00759 Car-Chr9:4487603 1.41E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4358 PF00847 AP2 2.00E-14 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01596 K09286 - csv:101210659 267.314