Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01598 ATGAGTAGTGTTTGTGCTGAGAATCAGAAATATCAGTTTCATTTTCAATTTCCTCCTTCTTCTTCTACTTCTGATTTTGTTGTTTCTGAGAGGATTCCTTTTCTGAAGGATATTAACGTTCCGCCGAGGAAGCTTCTTGCGGCGCGACGAGATCAAAACGCTGAAATGTGTTCTGATTCGCCGCGATTCTCGTTTGCTGTTGAATCGCTTTTGCAGAAGTTTTTGCCGTTCAATGGCGAGGATGAGGCGGAGGAGGACGGCGATCCGTATTCGTCCGATCATTTTCGGATGTATGAGTTTAAGGTGAGGCGGTGTACTCGTAGTCGGAGTCATGATTGGACGGATTGTCCGTTTGCTCATCCTGGAGAGAAGGCTCGTCGGCGGGATCCTCGTCGGTTTCATTACTCCGGCACGATGTGTCCGGAGTTCCGGCGTGGTGGATGTGGCCGTGGTGATGGATGTGAGTTCGCTCATGGAGTTTTTGAGTGTTGGCTTCATCCGGCGAGGTATCGGACTGAGGCTTGTAAAGATGGAAAGAACTGTAAGAGGAAGGTCTGTTTCTTTGCTCATTCGCCTCGTGAACTTCGTCTTTTGCCGCCGGTGAGTAACTTTCAAGGCGGTGGCTCTTGTTCTTCGCCGAATAAGAAGAGTTCTAATCTCAGATCGGCCGCTGGTTCTAATCACTGCTGCTTGTTTTGTCATTGCGGTGGAGCCGCCACCTCCTCGCCGACGTCGACTCTTTTCGGAATGTCTCATCTCTCTCCGCCGCACTCACCACCGCTCTCGCCGGGAAATCCTCGGTCGATGAATGGATTTTCTCCTATTTCAAGGTATAGTAATCCTGATCAGTCTAAGTTAAAGGGAGTTTTGAGCTATAAAGATGCACTGACCGAGCTCATGAGCTCTATTGAATCCATGAATATCGACGACGCTAATGCCACTTTAGCGGCCGCCATCCCCGCCCCTAGACCAACGCCTTGGATCGATGTTTCATCTCTTAATCCTGAAGATCAACTGCAGTTTATTCTCTCCCCTTCCACTCCAAACATCTCCGCCGCGGCGAACTTAACCTGCGAGCATAAATCTAACGCTGACAATGGATGGGCCTCCACCTCCGGTCCCGATCTCGGATGGGTTAATGATCTGCTGATGTAA 1155 49.7 MSSVCAENQKYQFHFQFPPSSSTSDFVVSERIPFLKDINVPPRKLLAARRDQNAEMCSDSPRFSFAVESLLQKFLPFNGEDEAEEDGDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVSNFQGGGSCSSPNKKSSNLRSAAGSNHCCLFCHCGGAATSSPTSTLFGMSHLSPPHSPPLSPGNPRSMNGFSPISRYSNPDQSKLKGVLSYKDALTELMSSIESMNIDDANATLAAAIPAPRPTPWIDVSSLNPEDQLQFILSPSTPNISAAANLTCEHKSNADNGWASTSGPDLGWVNDLLM 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12640412 12641566 - Carg19154-RA Car11g01598 157551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01598 384 ProSiteProfiles Zinc finger C3H1-type profile. 135 161 IPR000571 GO:0046872
Car11g01598 384 SMART c3hfinal6 169 192 IPR000571 GO:0046872
Car11g01598 384 SMART c3hfinal6 134 160 IPR000571 GO:0046872
Car11g01598 384 PANTHER UNKEMPT FAMILY MEMBER 37 383 IPR045234 -
Car11g01598 384 Gene3D - 134 197 - -
Car11g01598 384 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 37 383 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01598 Car-Chr11:12640412 Car12g01256 Car-Chr12:11829776 4.97E-65 dispersed
Car11g01598 Car-Chr11:12640412 Car19g00787 Car-Chr19:8548602 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4359 None None None None Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01598 K23047 - csv:101211149 572.392