Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car11g01601 | ATGACCACCGGAAGAGAAATTCTCCACAAAATGAAGGTGAAGGCAGGGTTTTGTTCTTCGGCGCCGGATACTGCTGCCAAAGGGAAGGCCAAAGCGACCAAGAATCATGTAAGCCATGGCAGCCATTTGGTTAAGGGCAAGACCAACCACCCCATGGAAGATTACTTGGTCACTGATTTCAAGCGCGTCAAGGACCACGACTTGGGTTTGTTTGCCATTTTCGACGGCCATTTGGGCCATGATGTTGCCAATTTCTTGCAGAATAATCTCTTTGATAATATCCTCAAACAGGCTGATTTCTGGAGCGAAACGAGAAAGGCCATAAAAAGAGCGTACAAGAAAACCGACGATGAAATATTGGATAAAGTAAAGCAGCTGGGGAGAGGAGGATCAACGGCGGTAACCGCCATATTGATCGACGGCCACAAACTCATCGTTGCCAACGTCGGAGATTCCAGAGCCGTTCTTTGCAAAAACGGCGTCGCTGAGCAGCTCTCCGTTGACCACGAACCCAGTAAAGAAAAAAGGGATATTGAAAGCCGTGGAGGCTTCGTATCAAATCTTCCAGGCGATGTGCCACGTGTCGACGGACAATTGGCTGTTGCGAGAGCATTTGGTGATAAGAGCTTGAAACTCCACCTCAGCTCAGAACCTGACGTGGAAGTCAAAACGGTGGATGAATCTACAGAGTTCATGATTTTGGCTAGCGATGGCATTTGGAAGGTAATGACAAACAAAGAGGCGGTGGAATCTATTAGACACATAAAGGATGCGAACGTGGCAGCCAAACGACTTATCGATGAAGCAGTATCCAGAAAAAGCAAGGACGACATATCGTGCATTGTTGTTAGGTTTCGGTGA | 861 | 47.5 | MTTGREILHKMKVKAGFCSSAPDTAAKGKAKATKNHVSHGSHLVKGKTNHPMEDYLVTDFKRVKDHDLGLFAIFDGHLGHDVANFLQNNLFDNILKQADFWSETRKAIKRAYKKTDDEILDKVKQLGRGGSTAVTAILIDGHKLIVANVGDSRAVLCKNGVAEQLSVDHEPSKEKRDIESRGGFVSNLPGDVPRVDGQLAVARAFGDKSLKLHLSSEPDVEVKTVDESTEFMILASDGIWKVMTNKEAVESIRHIKDANVAAKRLIDEAVSRKSKDDISCIVVRFR | 286 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 12750873 | 12752336 | - | Carg04624-RA | Car11g01601 | 157554 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car11g01601 | 286 | Pfam | Protein phosphatase 2C | 49 | 278 | IPR001932 | - | |
| Car11g01601 | 286 | PANTHER | PROTEIN PHOSPHATASE 2C | 3 | 285 | IPR015655 | GO:0004722|GO:0006470 | |
| Car11g01601 | 286 | CDD | PP2Cc | 37 | 285 | IPR001932 | - | |
| Car11g01601 | 286 | SMART | PP2C_4 | 34 | 283 | IPR001932 | - | |
| Car11g01601 | 286 | PANTHER | PROTEIN PHOSPHATASE 2C 39-RELATED | 3 | 285 | - | - | |
| Car11g01601 | 286 | SUPERFAMILY | PP2C-like | 34 | 285 | IPR036457 | - | |
| Car11g01601 | 286 | Gene3D | - | 14 | 286 | IPR036457 | - | |
| Car11g01601 | 286 | ProSiteProfiles | PPM-type phosphatase domain profile. | 38 | 285 | IPR001932 | - | |
| Car11g01601 | 286 | SMART | PP2C_SIG_2 | 43 | 285 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car08g00949 | Car-Chr8:6345620 | Car11g01601 | Car-Chr11:12750873 | 4.56E-38 | dispersed | |
| Car09g00767 | Car-Chr9:4525188 | Car11g01601 | Car-Chr11:12750873 | 1.71E-134 | dispersed | |
| Car11g01047 | Car-Chr11:7986940 | Car11g01601 | Car-Chr11:12750873 | 1.73E-28 | dispersed | |
| Car11g01601 | Car-Chr11:12750873 | Car16g00219 | Car-Chr16:1235974 | 1.28E-109 | dispersed | |
| Car17g00137 | Car-Chr17:835270 | Car11g01601 | Car-Chr11:12750873 | 1.13E-36 | dispersed | |
| Car11g01599 | Car-Chr11:12642670 | Car11g01601 | Car-Chr11:12750873 | 2.12E-21 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car11g01601 | K17506 | - | csv:101211399 | 503.056 |